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-rw-r--r--man/plot.mkinfit.Rd21
1 files changed, 17 insertions, 4 deletions
diff --git a/man/plot.mkinfit.Rd b/man/plot.mkinfit.Rd
index 733cdf76..9514c5e5 100644
--- a/man/plot.mkinfit.Rd
+++ b/man/plot.mkinfit.Rd
@@ -10,7 +10,7 @@
the observed data together with the solution of the fitted model.
If the current plot device is a \code{\link[tikzDevice]{tikz}} device,
- then latex is being used for the formatting of the chi2 error level,
+ then latex is being used for the formatting of the chi2 error level,
if \code{show_errmin = TRUE}.
}
\usage{
@@ -22,7 +22,9 @@
col_obs = 1:length(obs_vars), pch_obs = col_obs,
lty_obs = rep(1, length(obs_vars)),
add = FALSE, legend = !add,
- show_residuals = FALSE, maxabs = "auto",
+ show_residuals = FALSE,
+ show_errplot = FALSE,
+ maxabs = "auto",
sep_obs = FALSE, rel.height.middle = 0.9,
lpos = "topright", inset = c(0.05, 0.05),
show_errmin = FALSE, errmin_digits = 3, \dots)
@@ -69,10 +71,16 @@ plot_sep(fit, sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE, \dots)
}
\item{show_residuals}{
Should residuals be shown? If only one plot of the fits is shown, the
- residual plot is in the lower third of the plot? Otherwise, i.e. if
+ residual plot is in the lower third of the plot. Otherwise, i.e. if
"sep_obs" is given, the residual plots will be located to the right of
the plots of the fitted curves.
}
+ \item{show_errplot}{
+ Should squared residuals and the error model be shown? If only one plot of
+ the fits is shown, this plot is in the lower third of the plot.
+ Otherwise, i.e. if "sep_obs" is given, the residual plots will be located
+ to the right of the plots of the fitted curves.
+ }
\item{maxabs}{
Maximum absolute value of the residuals. This is used for the scaling of
the y axis and defaults to "auto".
@@ -109,9 +117,10 @@ plot_sep(fit, sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE, \dots)
# parent to sink included
SFO_SFO <- mkinmod(parent = mkinsub("SFO", "m1", full = "Parent"),
m1 = mkinsub("SFO", full = "Metabolite M1" ))
-fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE)
+fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, error_model = "tc")
plot(fit)
plot(fit, show_residuals = TRUE)
+plot(fit, show_errplot = TRUE)
# Show the observed variables separately
plot(fit, sep_obs = TRUE, lpos = c("topright", "bottomright"))
@@ -122,6 +131,10 @@ plot(fit, sep_obs = TRUE, show_residuals = TRUE, lpos = c("topright", "bottomrig
# The same can be obtained with less typing, using the convenience function plot_sep
plot_sep(fit, lpos = c("topright", "bottomright"))
+
+# Show the observed variables separately, with the error model
+plot(fit, sep_obs = TRUE, show_errplot = TRUE, lpos = c("topright", "bottomright"),
+ show_errmin = TRUE)
}
\author{
Johannes Ranke

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