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-rw-r--r--man/plot.mkinfit.Rd49
1 files changed, 31 insertions, 18 deletions
diff --git a/man/plot.mkinfit.Rd b/man/plot.mkinfit.Rd
index 494dc38d..b80928f7 100644
--- a/man/plot.mkinfit.Rd
+++ b/man/plot.mkinfit.Rd
@@ -14,10 +14,11 @@
xlab = "Time", ylab = "Observed",
xlim = range(fit$data$time),
ylim = "default",
- col_obs = 1:length(fit$mkinmod$map), pch_obs = col_obs,
- lty_obs = rep(1, length(fit$mkinmod$map)),
+ col_obs = 1:length(obs_vars), pch_obs = col_obs,
+ lty_obs = rep(1, length(obs_vars)),
add = FALSE, legend = !add,
show_residuals = FALSE, maxabs = "auto",
+ sep_vars = FALSE, rel.height.middle = 0.9,
lpos = "topright", inset = c(0.05, 0.05), \dots)
}
\arguments{
@@ -25,7 +26,7 @@
Alias for fit introduced for compatibility with the generic S3 method.
}
\item{fit}{
- an object of class \code{\link{mkinfit}}.
+ An object of class \code{\link{mkinfit}}.
}
\item{obs_vars}{
A character vector of names of the observed variables for which the
@@ -33,47 +34,54 @@
in the model.
}
\item{xlab}{
- label for the x axis.
+ Label for the x axis.
}
\item{ylab}{
- label for the y axis.
+ Label for the y axis.
}
\item{xlim}{
- plot range in x direction.
+ Plot range in x direction.
}
\item{ylim}{
- plot range in y direction.
+ Plot range in y direction.
}
\item{col_obs}{
- colors used for plotting the observed data and the corresponding model prediction lines.
+ Colors used for plotting the observed data and the corresponding model prediction lines.
}
\item{pch_obs}{
- symbols to be used for plotting the data.
+ Symbols to be used for plotting the data.
}
\item{lty_obs}{
- line types to be used for the model predictions.
+ Line types to be used for the model predictions.
}
\item{add}{
- should the plot be added to an existing plot?
+ Should the plot be added to an existing plot?
}
\item{legend}{
- should a legend be added to the plot?
+ Should a legend be added to the plot?
}
\item{show_residuals}{
- should residuals be shown in the lower third of the plot?
+ Should residuals be shown in the lower third of the plot?
}
\item{maxabs}{
Maximum absolute value of the residuals. This is used for the scaling of
the y axis and defaults to "auto".
}
+ \item{sep_obs}{
+ Should the observed variables be shown in separate subplots?
+ }
+ \item{rel.height.middle}{
+ The relative height of the middle plot, if more than two rows of plots are shown.
+ }
\item{lpos}{
- position of the legend. Passed to \code{\link{legend}} as the first argument.
+ Position(s) of the legend(s). Passed to \code{\link{legend}} as the first argument.
+ If not length one, this should be of the same length as the obs_var argument.
}
\item{inset}{
Passed to \code{\link{legend}} if applicable.
}
\item{\dots}{
- further arguments passed to \code{\link{plot}}.
+ Further arguments passed to \code{\link{plot}}.
}
}
\value{
@@ -81,13 +89,18 @@
}
\examples{
# One parent compound, one metabolite, both single first order, path from
-# parent to sink included
+# parent to sink included, use Levenberg-Marquardt for speed
SFO_SFO <- mkinmod(parent = mkinsub("SFO", "m1", full = "Parent"),
m1 = mkinsub("SFO", full = "Metabolite M1" ))
-fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE)
+fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, method.modFit = "Marq")
plot(fit)
+
+# Show the observed variables separately
+plot(fit, sep_obs = TRUE)
+
+# Show the observed variables separately, with residuals
+plot(fit, sep_obs = TRUE, show_residuals = TRUE, lpos = c("topright", "bottomright"))
}
\author{
Johannes Ranke
}
-\keyword{ hplot }

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