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-rw-r--r--test_dev.log69
1 files changed, 47 insertions, 22 deletions
diff --git a/test_dev.log b/test_dev.log
index c57bb958..df159d1e 100644
--- a/test_dev.log
+++ b/test_dev.log
@@ -1,37 +1,62 @@
Loading mkin
+Loading required package: parallel
Testing mkin
✔ | OK F W S | Context
-✔ | 4 | AIC calculation
+✔ | 5 | AIC calculation
✔ | 2 | Export dataset for reading into CAKE
-✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.9 s]
-✔ | 4 | Calculation of FOCUS chi2 error levels [0.4 s]
-✔ | 7 | Fitting the SFORB model [3.1 s]
-✔ | 5 | Analytical solutions for coupled models [2.8 s]
+✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s]
+✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s]
+✔ | 7 | Fitting the SFORB model [3.4 s]
+✔ | 5 | Analytical solutions for coupled models [3.1 s]
✔ | 5 | Calculation of Akaike weights
-✔ | 10 | Confidence intervals and p-values [0.9 s]
-✔ | 14 | Error model fitting [3.8 s]
+✔ | 14 | Confidence intervals and p-values [1.2 s]
+✔ | 14 | Error model fitting [5.8 s]
+✔ | 5 | Time step normalisation
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s]
✔ | 1 | Fitting the logistic model [0.2 s]
-✔ | 1 | Test dataset class mkinds used in gmkin
-✔ | 1 | mkinfit features [0.2 s]
-✔ | 12 | Special cases of mkinfit calls [0.6 s]
+✔ | 5 3 | Nonlinear mixed-effects models [0.1 s]
+────────────────────────────────────────────────────────────────────────────────
+Skip (test_mixed.R:4:3): Parent fits using saemix are correctly implemented
+Reason: !saemix_available is TRUE
+
+Skip (test_mixed.R:94:3): Print methods work
+Reason: !saemix_available is TRUE
+
+Skip (test_mixed.R:118:3): saem results are reproducible for biphasic fits
+Reason: !saemix_available is TRUE
+────────────────────────────────────────────────────────────────────────────────
+✔ | 2 | Test dataset classes mkinds and mkindsg
+✔ | 1 | mkinfit features [0.3 s]
+✔ | 10 | Special cases of mkinfit calls [0.3 s]
✔ | 8 | mkinmod model generation and printing [0.2 s]
✔ | 3 | Model predictions with mkinpredict [0.3 s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.3 s]
-✔ | 9 | Nonlinear mixed-effects models [7.3 s]
-✔ | 14 | Plotting [1.3 s]
+✔ | 14 2 | Evaluations according to 2015 NAFTA guidance [2.2 s]
+────────────────────────────────────────────────────────────────────────────────
+Skip (test_nafta.R:25:5): Test data from Appendix B are correctly evaluated
+Reason: getRversion() >= "4.1.0" is TRUE
+
+Skip (test_nafta.R:53:5): Test data from Appendix D are correctly evaluated
+Reason: getRversion() >= "4.1.0" is TRUE
+────────────────────────────────────────────────────────────────────────────────
+✔ | 9 | Nonlinear mixed-effects models [7.9 s]
+✔ | 0 1 | Plotting [0.7 s]
+────────────────────────────────────────────────────────────────────────────────
+Skip (test_plot.R:18:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
+Reason: getRversion() >= "4.1.0" is TRUE
+────────────────────────────────────────────────────────────────────────────────
✔ | 4 | Residuals extracted from mkinfit models
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4 s]
-✔ | 4 | Summary
+✔ | 4 | Summary [0.1 s]
✔ | 1 | Summaries of old mkinfit objects
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.0 s]
-✔ | 9 | Hypothesis tests [7.4 s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s]
+✔ | 9 | Hypothesis tests [7.7 s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.0 s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 36.9 s
+Duration: 41.2 s
+
+── Skipped tests ──────────────────────────────────────────────────────────────
+● !saemix_available is TRUE (3)
+● getRversion() >= "4.1.0" is TRUE (3)
-OK: 162
-Failed: 0
-Warnings: 0
-Skipped: 0
+[ FAIL 0 | WARN 0 | SKIP 6 | PASS 160 ]

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