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Diffstat (limited to 'tests/testthat/test_mixed.R')
| -rw-r--r-- | tests/testthat/test_mixed.R | 20 |
1 files changed, 20 insertions, 0 deletions
diff --git a/tests/testthat/test_mixed.R b/tests/testthat/test_mixed.R index b9715096..99a5fd3a 100644 --- a/tests/testthat/test_mixed.R +++ b/tests/testthat/test_mixed.R @@ -102,15 +102,35 @@ test_that("Reading spreadsheets, finding ill-defined parameters and covariate mo error_model = "const") lambda_sforb_saem_pH <- saem(lambda_sforb, covariates = covariates, covariate_models = list(log_k_lambda_bound_free ~ pH)) + expect_equal( as.character(illparms(lambda_sforb_saem_pH)), c("sd(lambda_free_0)", "sd(log_k_lambda_free_bound)")) lambda_endpoints <- endpoints(lambda_sforb_saem_pH) + expect_equal(lambda_endpoints$covariates$pH, 6.45) expect_equal( round(as.numeric(lambda_endpoints$distimes), 0), c(47, 422, 127, 7, 162)) + + # We should get the same endpoints when the covariates are centered + lambda_sforb_saem_pH_centered <- saem(lambda_sforb, covariates = covariates, + covariate_models = list(log_k_lambda_bound_free ~ pH), center_covariates = "median") + lambda_endpoints_centered <- endpoints(lambda_sforb_saem_pH_centered) + + expect_equal(lambda_endpoints_centered$covariates$pH, 6.45) + expect_equal( + round(as.numeric(lambda_endpoints_centered$distimes), 0), + c(47, 422, 127, 7, 162)) + + # Also check endpoints obtained for a different pH + lambda_endpoints_centered_7 <- endpoints(lambda_sforb_saem_pH_centered, covariates = c(pH = 7)) + expect_equal(lambda_endpoints_centered_7$covariates$pH, 7) + expect_equal( + round(as.numeric(lambda_endpoints_centered_7$distimes), 0), + c(39, 283, 85, 7, 106)) + }) test_that("SFO-SFO saemix specific analytical solution work", { |