diff options
Diffstat (limited to 'tests/testthat')
| -rw-r--r-- | tests/testthat/print_nafta_analysis.txt | 33 | ||||
| -rw-r--r-- | tests/testthat/summary_DFOP_FOCUS_C.txt | 2 | ||||
| -rw-r--r-- | tests/testthat/test_nafta.R | 9 | ||||
| -rw-r--r-- | tests/testthat/test_plots_summary_twa.R | 4 |
4 files changed, 43 insertions, 5 deletions
diff --git a/tests/testthat/print_nafta_analysis.txt b/tests/testthat/print_nafta_analysis.txt new file mode 100644 index 00000000..61d2539f --- /dev/null +++ b/tests/testthat/print_nafta_analysis.txt @@ -0,0 +1,33 @@ +Sums of squares: + SFO IORE DFOP +1378.6832 615.7730 517.8836 +[1] 717.4598 + +Parameters: +$SFO + Estimate Pr(>t) Lower Upper +parent_0 83.755751519 8.076390e-15 76.928220975 90.583282063 +k_parent_sink 0.001703321 7.452357e-05 0.001108568 0.002617164 + +$IORE + Estimate Pr(>t) Lower Upper +parent_0 9.685291e+01 NA 8.752855e+01 1.061773e+02 +k__iore_parent_sink 8.403374e-14 NA 1.092054e-19 6.466412e-08 +N_parent 6.684458e+00 NA 3.538511e+00 9.830405e+00 + +$DFOP + Estimate Pr(>t) Lower Upper +parent_0 9.755655e+01 4.439930e-13 8.884447e+01 1.062686e+02 +k1 4.240633e-02 3.554769e-02 1.414189e-02 1.271610e-01 +k2 8.237928e-04 2.060933e-02 3.172784e-04 2.138925e-03 +g 2.881037e-01 1.313715e-04 1.783967e-01 4.299694e-01 + + +DTx values: + DT50 DT90 DT50_rep +SFO 407 1352 407 +IORE 541 5192066 1562968 +DFOP 429 2383 841 + +Representative half-life: +[1] 841.4096 diff --git a/tests/testthat/summary_DFOP_FOCUS_C.txt b/tests/testthat/summary_DFOP_FOCUS_C.txt index d8a3e05a..33d55ebc 100644 --- a/tests/testthat/summary_DFOP_FOCUS_C.txt +++ b/tests/testthat/summary_DFOP_FOCUS_C.txt @@ -10,7 +10,7 @@ d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * Model predictions using solution type analytical -Fitted with method Port using 127 model solutions performed in 0.401 s +Fitted with method Port using test 0 model solutions performed in test time 0 s Weighting: none diff --git a/tests/testthat/test_nafta.R b/tests/testthat/test_nafta.R index 7d650ad8..3615c278 100644 --- a/tests/testthat/test_nafta.R +++ b/tests/testthat/test_nafta.R @@ -16,9 +16,6 @@ # You should have received a copy of the GNU General Public License along with # this program. If not, see <http://www.gnu.org/licenses/> -library(testthat) -library(mkin) - context("Evaluations according to the NAFTA guidance from 2015") test_that("Data for more than one compound are rejected", @@ -31,6 +28,7 @@ test_that("Test data from Appendix D are correctly evaluated", { dtx_sop <- matrix(c(407, 541, 429, 1352, 5192066, 2383), nrow = 3, ncol = 2) expect_equivalent(res$distimes[, 1:2], dtx_sop, tolerance = 1, scale = 1) + C0_sop <- c(SFO = 83.8, IORE = 96.9, DFOP = 97.6) C0_mkin <- sapply(res$parameters, function(x) x["parent_0", "Estimate"]) expect_equivalent(C0_mkin, C0_sop, scale = 1, tolerance = 0.1) @@ -38,4 +36,9 @@ test_that("Test data from Appendix D are correctly evaluated", { expect_equal(round(res$S_c), 717) expect_equal(signif(res$S[["SFO"]], 3), 1.38e+3) expect_equal(round(res$t_rep), 841) + + expect_known_output(print(res), "print_nafta_analysis.txt") + + plot_nafta <- function() plot(res) + vdiffr::expect_doppelganger("Plot NAFTA analysis SOP Appendix D", plot_nafta) }) diff --git a/tests/testthat/test_plots_summary_twa.R b/tests/testthat/test_plots_summary_twa.R index 83a6a040..d5f4f199 100644 --- a/tests/testthat/test_plots_summary_twa.R +++ b/tests/testthat/test_plots_summary_twa.R @@ -53,11 +53,13 @@ context("Summary") test_that("The summary is reproducible", { skip_on_cran() fit <- fits[["DFOP", "FOCUS_C"]] - undebug(summary.mkinfit) + test_summary <- summary(fit) test_summary$fit_version <- "Dummy 0.0 for testing" test_summary$fit_Rversion <- "Dummy R version for testing" test_summary$date.fit <- "Dummy date for testing" test_summary$date.summary <- "Dummy date for testing" + test_summary$calls <- "test 0" + test_summary$time <- c(elapsed = "test time 0") expect_known_output(print(test_summary), "summary_DFOP_FOCUS_C.txt") }) |