diff options
Diffstat (limited to 'tests/testthat')
-rw-r--r-- | tests/testthat/FOCUS_2006_D.csf | 2 | ||||
-rw-r--r-- | tests/testthat/setup_script.R | 2 | ||||
-rw-r--r-- | tests/testthat/test_error_models.R | 6 | ||||
-rw-r--r-- | tests/testthat/test_plots_summary_twa.R | 4 |
4 files changed, 7 insertions, 7 deletions
diff --git a/tests/testthat/FOCUS_2006_D.csf b/tests/testthat/FOCUS_2006_D.csf index 171abbb0..638acd88 100644 --- a/tests/testthat/FOCUS_2006_D.csf +++ b/tests/testthat/FOCUS_2006_D.csf @@ -5,7 +5,7 @@ Description: MeasurementUnits: % AR TimeUnits: days Comments: Created using mkin::CAKE_export -Date: 2019-10-21 +Date: 2019-10-22 Optimiser: IRLS [Data] diff --git a/tests/testthat/setup_script.R b/tests/testthat/setup_script.R index d8d94d4b..51fea4f6 100644 --- a/tests/testthat/setup_script.R +++ b/tests/testthat/setup_script.R @@ -76,3 +76,5 @@ f_SFO_lin_mkin_OLS <- mkinfit(m_synth_SFO_lin, SFO_lin_a, quiet = TRUE) f_SFO_lin_mkin_ML <- mkinfit(m_synth_SFO_lin, SFO_lin_a, quiet = TRUE, error_model = "const", error_model_algorithm = "direct") +fit_obs_1 <- mkinfit(m_synth_SFO_lin, SFO_lin_a, error_model = "obs", quiet = TRUE) +fit_tc_1 <- mkinfit(m_synth_SFO_lin, SFO_lin_a, error_model = "tc", quiet = TRUE) diff --git a/tests/testthat/test_error_models.R b/tests/testthat/test_error_models.R index d8263c95..12a8b7e5 100644 --- a/tests/testthat/test_error_models.R +++ b/tests/testthat/test_error_models.R @@ -20,18 +20,12 @@ context("Error model fitting") test_that("Error model 'obs' works", { skip_on_cran() - fit_obs_1 <- mkinfit(m_synth_SFO_lin, SFO_lin_a, error_model = "obs", quiet = TRUE) parms_2 <- round(fit_obs_1$bparms.optim, c(1, 4, 4, 4, 4, 4)) expect_equivalent(parms_2, c(102.1, 0.7389, 0.2982, 0.0203, 0.7677, 0.7246)) - plot_errmod_fit_obs_1 <- function() plot_err(fit_obs_1, sep_obs = FALSE) - - skip_on_travis() # This fails on Travis for an unknown reason - vdiffr::expect_doppelganger("plot_errmod with SFO_lin_a", plot_errmod_fit_obs_1) }) test_that("Error model 'tc' works", { skip_on_cran() - fit_tc_1 <- mkinfit(m_synth_SFO_lin, SFO_lin_a, error_model = "tc", quiet = TRUE) parms_3 <- round(fit_tc_1$bparms.optim, c(1, 4, 4, 4, 4, 4)) expect_equivalent(parms_3, c(102.1, 0.7393, 0.2992, 0.0202, 0.7687, 0.7229)) }) diff --git a/tests/testthat/test_plots_summary_twa.R b/tests/testthat/test_plots_summary_twa.R index 089290f6..e3ecbbc4 100644 --- a/tests/testthat/test_plots_summary_twa.R +++ b/tests/testthat/test_plots_summary_twa.R @@ -99,6 +99,8 @@ test_that("Plotting mkinfit and mmkin objects is reproducible", { mmkin_SFO <- function() plot(fits["SFO",]) plot_res_sfo_sfo <- function() plot_res(f_sfo_sfo_desolve) plot_err_sfo_sfo <- function() plot_err(f_sfo_sfo_desolve) + plot_errmod_fit_obs_1 <- function() plot_err(fit_obs_1, sep_obs = FALSE) + plot_errmod_fit_tc_1 <- function() plot_err(fit_tc_1, sep_obs = FALSE) vdiffr::expect_doppelganger("mkinfit plot for FOCUS C with sep = TRUE", plot_sep_FOCUS_C_SFO) vdiffr::expect_doppelganger("mkinparplot for FOCUS C SFO", mkinparplot_FOCUS_C_SFO) @@ -107,6 +109,8 @@ test_that("Plotting mkinfit and mmkin objects is reproducible", { vdiffr::expect_doppelganger("mmkin plot for SFO (FOCUS C and D)", mmkin_SFO) vdiffr::expect_doppelganger("plot_res for FOCUS D", plot_res_sfo_sfo) vdiffr::expect_doppelganger("plot_err for FOCUS D", plot_err_sfo_sfo) + vdiffr::expect_doppelganger("plot_errmod with SFO_lin_a_obs", plot_errmod_fit_obs_1) + vdiffr::expect_doppelganger("plot_errmod with SFO_lin_a_tc", plot_errmod_fit_tc_1) }) context("AIC calculation") |