Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2023-04-15 | Fix platform dependence in test | Johannes Ranke | 1 | -1/+5 | |
2023-04-15 | Make predefined symbols safer | Johannes Ranke | 9 | -28/+113 | |
We still need to create a parallel processing cluster _after_ creating a compiled model that is moved to a user defined location, at least I did not find another way to make it work. This is not a problem with parallel processing without a cluster, which is not available on Windows. | |||||
2023-04-15 | Don't try(mkinpredict), it would still error later | Johannes Ranke | 1 | -3/+2 | |
2023-04-15 | Move preprocessing of DMTA data to the test setup | Johannes Ranke | 2 | -11/+12 | |
2023-04-15 | Make using predefined symbols optional | Johannes Ranke | 1 | -2/+11 | |
I got crashes under some circumstances when using symbols stored in the mkinmod object. One such circumstance was the use of a moved DLL in combination with parallel computing on a cluster. As I cannot exactly define at the moment when this happens, it is better to make this an opt in. | |||||
2023-04-14 | Dont fix mean_degparms if it does not exist | Johannes Ranke | 1 | -4/+6 | |
2023-04-14 | Reintroduce codecov badge with correct link | Johannes Ranke | 1 | -0/+1 | |
2023-04-06 | Remove codecov badge, as the link does not work | Johannes Ranke | 2 | -2/+1 | |
Also, every time I would like to log in to codecov.io with my github account, it tells me that it wants complete read and write access to all my repositories, which I do not want to grant for obvious reasons. | |||||
2023-04-06 | Fix a bug with moved DLLs and current deSolve | Johannes Ranke | 3 | -24/+18 | |
In mkinmod, dll_info was not included in the returned model object in the case that the DLL was moved to a user defined directory. This is now fixed. | |||||
2023-04-06 | Check notes on winbuilder | Johannes Ranke | 3 | -6/+6 | |
- The CRAN spell check does not like 'backend', using 'back end' now - URL updates in README | |||||
2023-04-02 | Bump date | Johannes Ranke | 1 | -1/+1 | |
2023-04-02 | Deal with covariates in summary for saem.mmkin objects | Johannes Ranke | 5 | -20/+49 | |
2023-04-01 | Update tests on 5950x | Johannes Ranke | 7 | -166/+159 | |
Update platform dependent test plots | |||||
2023-03-23 | Support covariates in endpoints() | Johannes Ranke | 12 | -49/+100 | |
2023-03-22 | Merge branch 'main' into covariate_parms_and_endpoints | Johannes Ranke | 10 | -160/+169 | |
2023-03-22 | Fix typo in mkinerrmin | Johannes Ranke | 10 | -160/+169 | |
Thanks to Sebastian Meyer for spotting it. | |||||
2023-03-22 | Fix plotting saemix without covariates, polish | Johannes Ranke | 1 | -4/+11 | |
Better linetypes and labels | |||||
2023-03-20 | Support covariates in parms and plot.saem.mmkin | Johannes Ranke | 3 | -53/+113 | |
2023-03-15 | Start parms and endpoints for covariates | Johannes Ranke | 2 | -3/+13 | |
2023-03-14 | deSolve 1.35 is on CRAN now, thanks Thomas! | Johannes Ranke | 1 | -1/+0 | |
2023-02-26 | Improve documentation of the format | Johannes Ranke | 2 | -3/+38 | |
2023-02-23 | Basic check if covariate data are usable | Johannes Ranke | 1 | -4/+11 | |
2023-02-18 | Tell travis to take deSolve from drat repo | Johannes Ranke | 1 | -0/+1 | |
It seems that eddelbuettel/r-ci#10 is still bugging me | |||||
2023-02-18 | Mention recent case studies in README | Johannes Ranke | 4 | -10/+21 | |
2023-02-17 | Update online docs, fix bug that surfaced | Johannes Ranke | 42 | -294/+750 | |
2023-02-17 | Update benchmark results for 7950X | Johannes Ranke | 12 | -124/+210 | |
2023-02-17 | Rethink versioning and remove 7950X benchmarks | Johannes Ranke | 4 | -2/+2 | |
I will add benchmark data for 1.2.0, 1.2.2 and 1.2.3 for better comparison | |||||
2023-02-17 | Mention deSolve development in NEWS | Johannes Ranke | 1 | -2/+6 | |
2023-02-17 | Finish adapting to upcoming deSolve | Johannes Ranke | 18 | -229/+267 | |
2023-02-17 | Commit prebuilt vignettes from desktop | Johannes Ranke | 3 | -0/+0 | |
2023-02-17 | Merge remote-tracking branch 'origin/main' into faster_lsoda | Johannes Ranke | 4 | -6/+7 | |
2023-02-17 | Fix path, build target for prebuilt pdf vignettes | Johannes Ranke | 2 | -1/+4 | |
2023-02-13 | Update mmkin docs, parallel is not loaded any more | Johannes Ranke | 1 | -4/+3 | |
2023-02-13 | Prepare to keep prebuilt vignettes as pdf in git | Johannes Ranke | 1 | -1/+0 | |
2023-02-13 | WIP adapting to new deSolve with faster lsoda | Johannes Ranke | 5 | -100/+104 | |
2023-02-13 | Merge branch 'main' into custom_lsoda_call | Johannes Ranke | 494 | -14040/+33507 | |
2023-01-28 | Update saem benchmark with new CPU | Johannes Ranke | 3 | -22/+123 | |
2023-01-28 | Some improvements to the README | Johannes Ranke | 4 | -53/+202 | |
2023-01-28 | Build online HTML versions of prebuilt vignettes | Johannes Ranke | 39 | -49/+10017 | |
Also, give some structure to the menu for selecting articles | |||||
2023-01-09 | Prebuilt PDF vignettes, summary_listing | Johannes Ranke | 74 | -607/+6255 | |
2023-01-05 | Don't preschedule multistart runs | Johannes Ranke | 1 | -2/+5 | |
Sometimes a lot of them fail, so we were wasting time | |||||
2023-01-04 | Update documentation of 'use_of_ff' argument | Johannes Ranke | 1 | -1/+1 | |
2023-01-03 | Neutral names for code chunks in the template | Johannes Ranke | 1 | -5/+4 | |
2023-01-03 | Reflect changed name of dll directory in template | Johannes Ranke | 2 | -1/+2 | |
2023-01-03 | Improve template text, use neutral name for dll_dir | Johannes Ranke | 1 | -6/+6 | |
2023-01-03 | Improved skeleton for hierarchical fits | Johannes Ranke | 4 | -22/+175 | |
Now with working pathway fits using SFORB-SFO2 (only two parallel metabolites instead of three) as the data for compound Ia was not sufficient for a reliable fit. | |||||
2023-01-02 | Fix no_random_effect with character vector | Johannes Ranke | 1 | -1/+1 | |
2023-01-02 | Echo R code per default in markdown template | Johannes Ranke | 1 | -1/+1 | |
2022-12-22 | Improve code formatting in template skeleton | Johannes Ranke | 1 | -1/+3 | |
2022-12-19 | Rename template folder, create format | Johannes Ranke | 12 | -48/+110 | |
Instead of rmarkdown::pdf_document, mkin::hierarchical_kinetics is used as a document format in the template. In this way, the template file can be freed from some R code and yaml options that the average user does not have to be aware of. |