| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2014-08-25 | Bug fix and unit tests for mkinerrmin | Johannes Ranke | 9 | -98/+146 | |
| See NEWS.md for details | |||||
| 2014-08-25 | Remove intermediate vignette files when cleaning | Johannes Ranke | 1 | -0/+1 | |
| 2014-08-20 | Fix mkinfit for a special situation | Johannes Ranke | 3 | -8/+10 | |
| See NEWS.md: When the parent was not the (only) variable with the highest value out of all variables in the observed data, it could happen that the initial value (state.ini) was not initialised. | |||||
| 2014-08-20 | Update NEWS with change from yesterday | Johannes Ranke | 1 | -0/+6 | |
| 2014-08-19 | Small reformulations | Johannes Ranke | 1 | -6/+5 | |
| 2014-08-19 | Improve formatting of differential equations in output | Johannes Ranke | 5 | -4/+5 | |
| Rebuild of FOCUS_Z vignette with improved formatting | |||||
| 2014-08-02 | More to do, gathered during the software validation checks | Johannes Ranke | 1 | -0/+2 | |
| 2014-07-31 | More to do, gathered during the software validation checks | Johannes Ranke | 1 | -0/+5 | |
| 2014-07-25 | Fix internal naming of g for transform_fractions=FALSE | Johannes Ranke | 3 | -3/+18 | |
| 2014-07-24 | Improve formulation | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-24 | Semantic correction in help file | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-24 | Bump version, better default for state.ini | Johannes Ranke | 4 | -3/+16 | |
| 2014-07-24 | Update vignettes with 0.9-32 just released to CRAN | Johannes Ranke | 3 | -39/+33 | |
| 2014-07-24 | Avoid artificial zero residual in mkinresplot | Johannes Ranke | 3 | -2/+5 | |
| 2014-07-23 | Parallel metabolite formation with formation fractions in mkinerrmin | Johannes Ranke | 4 | -4/+10 | |
| 2014-07-22 | Formatting TODO | Johannes Ranke | 1 | -0/+1 | |
| 2014-07-21 | Ignore vignette build timestamp | Johannes Ranke | 1 | -0/+1 | |
| 2014-07-21 | Residual plots are important | Johannes Ranke | 1 | -0/+1 | |
| 2014-07-21 | Simplify usage examples | Johannes Ranke | 1 | -17/+16 | |
| 2014-07-21 | Bugfix, model shorthand, state.ini[[1]] from observed data | Johannes Ranke | 11 | -231/+279 | |
| - The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes | |||||
| 2014-07-17 | Return complete list of initial states after fitting | Johannes Ranke | 1 | -1/+4 | |
| This is useful for specifying state.ini in a subsequent call to mkinfit | |||||
| 2014-07-17 | Handle non-convergence and maximum number of iterations | Johannes Ranke | 7 | -95/+190 | |
| For details see NEWS.md | |||||
| 2014-07-16 | Merge branch 'master' into iore | Johannes Ranke | 3 | -3/+34 | |
| 2014-07-16 | Insert empty lines to have R make separate entries | Johannes Ranke | 1 | -0/+30 | |
| 2014-07-14 | Small improvements to usage examples | Johannes Ranke | 1 | -2/+3 | |
| 2014-07-14 | Vignettes as just synced to the static documentation on r-forge | Johannes Ranke | 3 | -27/+21 | |
| 2014-07-14 | Fix syncinc with r-forge | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-14 | Bump version as 0.9-31 was released today | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-14 | Merge bugfix branch 'master' into iore | Johannes Ranke | 8 | -109/+1212 | |
| Add IORE support to mkinerrmin | |||||
| 2014-07-14 | Nearly complete support for IORE, pending mkinerrmin | Johannes Ranke | 9 | -30/+98 | |
| 2014-07-14 | Merge bugfix release 0.9-31 from 'master' into iore | Johannes Ranke | 2 | -2/+2 | |
| 2014-07-14 | Bugfix release version 0.9-31 | Johannes Ranke | 8 | -30/+1136 | |
| 2014-07-12 | First working fits with IORE model | Johannes Ranke | 8 | -11/+86 | |
| 2014-07-11 | It is B. Mikolasch, not M. Mikolasch... | Johannes Ranke | 2 | -2/+2 | |
| 2014-07-11 | Update of syncing to r-forge without git-svn | Johannes Ranke | 1 | -15/+12 | |
| 2014-07-11 | Update the date | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-11 | Improve formatting in FOCUS_L vignette, rebuild vignettes | Johannes Ranke | 28 | -0/+5 | |
| 2014-07-07 | Coefficient matrix for formation fractions, no sink and one pathway | Johannes Ranke | 1 | -22/+26 | |
| 2014-07-03 | Add a more complex usage example | Johannes Ranke | 1 | -1/+17 | |
| 2014-07-02 | Update of vignettes | Johannes Ranke | 16 | -0/+0 | |
| 2014-07-02 | Do not introduce formation fractions for singular pathways | Johannes Ranke | 2 | -27/+29 | |
| - As a consequence, we do not need implicit formation fractions in mkinfit | |||||
| 2014-07-02 | Warning -> message, and only if initial parameter was not 1 | Johannes Ranke | 1 | -2/+4 | |
| 2014-07-02 | Set implicit formation fraction to 1 even if set otherwise in parms.ini | Johannes Ranke | 1 | -6/+8 | |
| 2014-07-02 | Internal parameter transformations are optional | Johannes Ranke | 1 | -2/+2 | |
| 2014-07-02 | Update vignettes - working flawlessly now! | Johannes Ranke | 16 | -0/+0 | |
| 2014-07-02 | Move handling of implicitly fixed formation fractions to mkinfit | Johannes Ranke | 2 | -19/+11 | |
| 2014-07-02 | Typo | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-02 | Support formation fractions without sink pathway, updates | Johannes Ranke | 12 | -197/+317 | |
| 2014-07-01 | One more source code comment | Johannes Ranke | 1 | -0/+2 | |
| 2014-07-01 | One more check, update source code comment | Johannes Ranke | 1 | -2/+3 | |
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index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
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