Age | Commit message (Collapse) | Author | Files | Lines | |
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2019-10-21 | Improve some plotting routines, more tests | Johannes Ranke | 21 | -98/+792 | |
Static documentation rebuilt by pkgdown | |||||
2019-10-21 | Static documentation rebuilt by pkgdown | Johannes Ranke | 2 | -9/+0 | |
2019-10-21 | Improve tests, remove geometric_mean | Johannes Ranke | 16 | -304/+362 | |
2019-10-21 | Refactor mkinfit, infrastructure work | Johannes Ranke | 19 | -440/+535 | |
mkinfit objects now include an ll() function to calculate the log-likelihood. Part of the code was refactored, hopefully making it easier to read and maintain. IRLS is currently the default algorithm for the error model "obs", for no particular reason. This may be subject to change when I get around to investigate. Slow tests are now in a separate subdirectory and will probably only be run by my own Makefile target. Formatting of test logs is improved. Roundtripping error model parameters works with a precision of 10% when we use lots of replicates in the synthetic data (see slow tests). This is not new in this commit, but as I think it is reasonable this closes #7. | |||||
2019-10-21 | Improve test log formatting | Johannes Ranke | 1 | -0/+1 | |
2019-09-19 | Revert a change in the original add_err function | Johannes Ranke | 2 | -5/+5 | |
that I made in the first attempt to work around the issue with the %in% operator in the example code Static documentation rebuilt by pkgdown | |||||
2019-09-19 | Static documentation rebuilt by pkgdown | Johannes Ranke | 20 | -219/+681 | |
Use lazy = TRUE in the pd target for generating pkgdown documentation | |||||
2019-09-19 | Comment out the code of the add_err() function | Johannes Ranke | 1 | -148/+146 | |
as it leads to problems with current pkgdown versions r-lib/pkgdown#1149 | |||||
2019-09-18 | Static documentation rebuilt by pkgdown | Johannes Ranke | 13 | -69/+67 | |
to check if the link to the pfm package is correctly generated by pkgdown after preparing the pfm package docs accordingly | |||||
2019-09-18 | Add url: tag to _pkgdown.yml | Johannes Ranke | 15 | -66/+263 | |
Static documentation rebuilt by pkgdown | |||||
2019-09-18 | Further corrections of the twa vignette | Johannes Ranke | 14 | -398/+223 | |
Static documentation rebuilt by pkgdown | |||||
2019-09-18 | Correct and rebuild docs | Johannes Ranke | 73 | -913/+1657 | |
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown | |||||
2019-09-18 | Add hockey stick formulas to maximum twa vignette | Johannes Ranke | 3 | -10/+393 | |
2019-09-02 | Some changes to improve plots on beamer slides | Johannes Ranke | 8 | -20/+41 | |
2019-07-09 | Address winbuilder R-devel warning about usage | Johannes Ranke | 3 | -5/+39 | |
2019-07-09 | Merge branch 'master' of kolab.jrwb.de:mkin | Johannes Ranke | 0 | -0/+0 | |
2019-07-09 | Adaptations for gmkin | Johannes Ranke | 42 | -743/+969 | |
Address winbuilder check problems, update check log, update of static docs | |||||
2019-07-08 | Adaptations for gmkin | Johannes Ranke | 1 | -1/+3 | |
2019-07-08 | Support summarizing older fits | Johannes Ranke | 6 | -17/+51 | |
generated with mkin < 0.9.49.5 | |||||
2019-07-05 | Static documentation rebuilt by pkgdown | Johannes Ranke | 93 | -1032/+849 | |
2019-07-04 | Update README and introductory vignette | Johannes Ranke | 5 | -45/+106 | |
2019-07-04 | Address failures of CRAN checks, improve NEWSv0.9.49.5 | Johannes Ranke | 19 | -81/+91 | |
Static documentation rebuilt by pkgdown | |||||
2019-07-03 | Skip a test on CRAN/winbuilder | Johannes Ranke | 1 | -0/+1 | |
The test uses multiple cores in order to complete within a reasonable time | |||||
2019-07-03 | Add check and test logs | Johannes Ranke | 3 | -17/+9 | |
2019-07-03 | Update DESCRIPTION, improve NEWS | Johannes Ranke | 18 | -91/+91 | |
Static documentation rebuilt by pkgdown | |||||
2019-07-02 | Typo | Johannes Ranke | 1 | -1/+1 | |
2019-06-20 | Merge pull request #8 from wibeasley/patch-1 | Johannes Ranke | 1 | -1/+1 | |
change to `superseded` | |||||
2019-06-19 | change to `superseded` | Will Beasley | 1 | -1/+1 | |
https://en.wiktionary.org/wiki/superseed | |||||
2019-06-05 | Merge branch 'algorithm' | Johannes Ranke | 159 | -495/+1198 | |
2019-06-05 | Adapt tests to new algorithms and output | Johannes Ranke | 4 | -381/+14 | |
One of the tests exceeded the number of iterations when using the d_3 error model algorithm, so only use "direct" in this case. | |||||
2019-06-05 | Add error model algorithm to output | Johannes Ranke | 17 | -110/+198 | |
2019-06-04 | Fix a bug introduced in the last commit | Johannes Ranke | 2 | -3/+5 | |
2019-06-04 | For the d_3 algorithm, report which was better, if any | Johannes Ranke | 1 | -2/+13 | |
2019-06-04 | Add sources for test data for better transparency | Johannes Ranke | 1 | -0/+55 | |
2019-06-04 | Also wait for codecov... | Johannes Ranke | 1 | -1/+1 | |
2019-06-04 | Fix travis configuration (hopefully) | Johannes Ranke | 1 | -1/+1 | |
2019-06-04 | Let travis wait longer for the check to finish | Johannes Ranke | 1 | -0/+4 | |
2019-06-04 | Additional algorithm "d_c", more tests, docs | Johannes Ranke | 156 | -528/+1233 | |
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets. | |||||
2019-06-04 | Algorithms direct, two-, three-, fourstep, IRLS | Johannes Ranke | 2 | -14/+86 | |
All of them are working now and allow for comparison Based on SFO, DFOP and HS fits to twelve test datasets, only the combination of direct and threestep is needed to find the lowest AIC | |||||
2019-06-03 | Status von Samstag morgen - untested | Johannes Ranke | 2 | -37/+105 | |
2019-05-31 | Experimental data for finding error model algorithm | Johannes Ranke | 2 | -0/+65 | |
2019-05-24 | Typo | Johannes Ranke | 1 | -1/+1 | |
2019-05-23 | Fix a bug that could lead to wrong chi2 error levels | Johannes Ranke | 5 | -29/+32 | |
2019-05-21 | Clarify the relation of the two-component error model | Johannes Ranke | 1 | -2/+3 | |
in relation to the original version by Rocke and Lorenzato | |||||
2019-05-20 | Only use colors for error model "obs" | Johannes Ranke | 1 | -3/+3 | |
2019-05-14 | Don't use remote CRAN incoming checks | Johannes Ranke | 1 | -1/+1 | |
2019-05-08 | Add functionality to plot the error model | Johannes Ranke | 37 | -129/+600 | |
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs | |||||
2019-05-07 | Fix hessian calculations | Johannes Ranke | 27 | -1164/+963 | |
Static documentation rebuilt by pkgdown | |||||
2019-05-07 | After the OLS step, use OLS parameter estimates | Johannes Ranke | 31 | -1073/+1025 | |
- Fix the respective error in the code - Static documentation rebuilt by pkgdown | |||||
2019-05-03 | Improve error model fitting | Johannes Ranke | 49 | -592/+622 | |
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown |