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2016-10-26Static documentation rebuilt by pkgdown::build_site()Johannes Ranke214-1310/+4381
2016-10-22Improve yaml formattingJohannes Ranke1-1/+1
2016-10-22Update way to specify encoding, improve FOCUS_L TOCJohannes Ranke9-124/+149
2016-10-13Cleaning up a bitJohannes Ranke3-19/+77
2016-10-06Static documentation rebuilt by pkgdown::build_site()Johannes Ranke7-29/+29
2016-10-06Static documentation rebuilt by pkgdown::build_site()Johannes Ranke95-17186/+53
2016-10-06Static documentation rebuilt by pkgdown::build_site()Johannes Ranke70-285/+9316
2016-10-06Remove staticdocs from old locationJohannes Ranke70-17199/+0
2016-09-28Add drat target and rebuild for dratJohannes Ranke7-1/+1859
2016-09-10Static documentation rebuilt with current staticdocsJohannes Ranke80-107/+15643
Using hadley/staticdocs commit #8c1069d from 8 days ago
2016-09-10Static documentation rebuilt by staticdocs::build_site()Johannes Ranke49-260/+279
2016-09-10Plot using R model if compiled model is not availableJohannes Ranke3-4/+17
2016-09-10Forgot to include the latest NEWS entry in 0.9.44Johannes Ranke1-0/+6
2016-06-28Build log for v0.9.44v0.9.44Johannes Ranke1-1/+6
2016-06-28Bump version for new release, rebuild static docsJohannes Ranke48-217/+212
The test test_FOMC_ill-defined leads to errors on several architectures/distributions, as apparent from CRAN checks, so we need a new release. Static documentation rebuilt by staticdocs::build_site()
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke48-244/+228
2016-06-28Test the package using devtools to get a test.logJohannes Ranke2-9/+19
2016-06-28Skip testing for warning for ill-defined FOMC fitsJohannes Ranke1-0/+2
This caused the test suite to fail on r-forge for v0.9.43, obviously no warning was produced in one of the two expectations
2016-06-28Attempts to reduce vignette sizeJohannes Ranke8-66/+86
Reducing the size of some figures and switching of retina figures in the preamble only gives a small decrease in vignette size, but may be enough to get the size of the doc directory below 5 MB to avoid the NOTE in the corresponding check (which I did not get locally, nor on winbuilder using r-devel.
2016-06-28Bump version after release to CRANJohannes Ranke1-1/+1
2016-06-28Build log of the package just submitted to CRANv0.9.43Johannes Ranke1-1/+1
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke14-105/+105
2016-06-28Update NEWSJohannes Ranke1-2/+2
2016-06-28The location of my local svn directory has changedJohannes Ranke1-1/+1
2016-06-28Static documentation rebuilt by staticdocs::build_site()Johannes Ranke14-108/+108
2016-06-28Avoid multicore fits in vignettes for passing CRAN checksJohannes Ranke59-650/+1636
Also a small fix to the FOCUS Z vignette, and an update of the static documentation generated by staticdocs.
2016-06-28Convenience wrapper plot_sep, further vignette updatesJohannes Ranke7-123/+108
2016-06-28Do not watch vignettes for builds without rebuilding themJohannes Ranke1-1/+1
This avoids the situation that a new function is needed in a vignette but the first thing that the build tries to do is building it.
2016-06-27Bump version for publication, update staticdocsJohannes Ranke1-2/+2
2016-06-27Complete mkin vignette, update FOCUS L vignetteJohannes Ranke6-467/+554
The mkin vignette now describes how confidence intervals and the t-test are calculated. The FOCUS L vignette is updated with the new floating toc provided by the current rmarkdown package, and also uses current, improved mkin functionality.
2016-06-27Improve listing of weights in output, update NEWSJohannes Ranke4-11/+23
2016-06-27Show chi2 in plot.mkinfit, round with signifJohannes Ranke5-13/+40
2016-06-25Fix the plot margins for combined plotsJohannes Ranke5-11/+49
2016-06-25Now the old behaviour is restored for compatibility reasonsJohannes Ranke3-16/+26
When observed variables are not shown in separate plots, the residual plot is shown in the lower third of the total plotting area
2016-06-25Working state, but not backwards compatibleJohannes Ranke5-69/+134
In this commit, the separatation of plots for observed variables works. The formatting should be improved. However, in gmkin, plotting with show_residuals = TRUE is used, and the GUI expects that the residual plot is below the main plot. This behaviour should be restored.
2016-06-24Convert main vignette to Rmd/html, add_err(), fixesJohannes Ranke11-106/+581
2016-06-24TypoJohannes Ranke1-1/+1
2016-06-17Change the title of the package, small bugfixJohannes Ranke3-12/+15
2016-06-17Remove misplaced commentJohannes Ranke1-4/+1
2016-06-09Fix a bug in the listing of formation fractionsJohannes Ranke3-5/+9
The bug could only occur if a parent compound with a metabolite would end in the letter 'f' and was therefore not noticed earlier
2016-04-21Avoid unnecessary stop in edge case, improve warningsJohannes Ranke6-11/+69
mkinfit: Do not error out in cases where the fit converges, but the Jacobian for the untransformed model cost can not be estimated. Give a warning instead and return NA for the t-test results. summary.mkinfit: Give a warning message when the covariance matrix can not be obtained. A test has been added to containing such an edge case to check that the warnings are correctly issued and the fit does not terminate.
2016-03-25Remove outdated reference to the inline packageJohannes Ranke3-4/+9
2016-03-24Static documentation rebuilt by staticdocs::build_site()v0.9.42Johannes Ranke47-617/+440
2016-03-24Address feedback from CRAN submissionJohannes Ranke41-220/+411
- Put the CRAN URL that the badge points to into canonical form. I had missed the requirement to use the canonical form before, as the R CMD check message complained about a (possibily) invalid URL, so I overlooked the explanation later in the check log. Thanks to Uwe for his patience. Fix checked with winbuilder. - Slightly reduced the build time for the compiled_models vignette by skipping the warm-up. 3 repetitions are necessary for the autoplot method to work
2016-03-23Static documentation rebuilt by staticdocs::build_site()Johannes Ranke13-61/+61
2016-03-23Added 'from_max_mean' to 'mkinfit'.Johannes Ranke54-225/+259
- Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel
2015-12-10Improve print method for mkinmodJohannes Ranke2-2/+5
2015-12-09Improve mkinmod error message for missing target compartment definitionJohannes Ranke2-0/+3
Closes #6.
2015-12-09Static documentation rebuilt by staticdocs::build_site()Johannes Ranke17-95/+79
2015-12-09Some updates and simplifications of the READMEJohannes Ranke2-33/+10

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