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2015-04-16Pending commit of an updated vignetteJohannes Ranke1-77/+76
2015-04-14Compile differential equation models with ccSolve packageJohannes Ranke5-14/+56
If the ccSolve package is available, and time is not in the right hand side of the equations (i.e. if only SFO and SFORB models are used), the differential equation model is compiled from auto-generated C code. Currently, one test (FOCUS 2006 D SFO_SFO) fails
2015-02-21Avoid NOTES in R CMD checkJohannes Ranke3-1/+6
- Export S3 methods - Avoid using undeclared variable names
2015-02-20Add termination message to mkinfit, prepare releaseJohannes Ranke3-2/+14
2015-02-20Fix printing the summary if iterations are not availableJohannes Ranke3-1/+6
This was broken for using method.modFit = "SANN"
2014-12-18Updated vignettes during staticdoc generationJohannes Ranke3-30/+30
2014-11-23Simply get rid of the warnings when drawing arrowsJohannes Ranke1-8/+7
2014-11-23Avoid spurious warning in mkinparplot, bump versionJohannes Ranke3-6/+18
2014-11-23Use model as in the original publicationJohannes Ranke1-1/+1
2014-11-21Update date and static docs for release to CRANv0.9-34Johannes Ranke4-278/+272
2014-11-20Add the year of the first distributed KinGUII versionJohannes Ranke1-3/+3
2014-11-13Update the dateJohannes Ranke1-1/+1
2014-11-13Exclude vignette building timestamp as R CMD check complainsJohannes Ranke1-0/+1
2014-11-13Fix code/documentation mismatchJohannes Ranke1-2/+2
2014-11-13Formatting and writing improvedJohannes Ranke1-1/+2
2014-11-13Expand the IORE example a bitJohannes Ranke1-3/+4
2014-11-12Add a hint about equivalence of FOMC and IORE modelsJohannes Ranke1-0/+2
2014-11-12Add an IORE example for parent decline kineticsJohannes Ranke1-0/+4
2014-11-12Update the FOCUS_Z vignette for default "Port" algorithmJohannes Ranke2-11/+4
2014-11-12Fix for IORE in mkinmodJohannes Ranke2-4/+9
2014-11-12Merge branch 'master' of https://github.com/jranke/mkin into ioreJohannes Ranke1-1/+1
2014-11-12IORE working for parent and metabolites, introduce mkinsubJohannes Ranke6-4/+84
2014-11-12Fix the typo in the help page, tooJohannes Ranke1-1/+1
2014-11-12Merge branch 'master' into ioreJohannes Ranke23-506/+798
2014-11-12Fix a typo in the list of possible argumentsJohannes Ranke1-1/+1
Thanks to Michael Brauer for the hint
2014-10-29Correct name of the DFOP model according to FOCUS kineticsJohannes Ranke1-1/+1
2014-10-23Update to READMEJohannes Ranke1-2/+2
2014-10-22Always include 0 on y axis when plotting during the fitJohannes Ranke3-2/+4
2014-10-15Switch to using the Port algorithm per defaultJohannes Ranke7-81/+95
2014-10-14Further formatting improvement for differential equationsJohannes Ranke5-47/+57
2014-10-14Add a comment about transforming fractionsJohannes Ranke1-4/+10
2014-10-14Some cosmeticsJohannes Ranke1-4/+4
2014-10-14Link the the new gmkin homepageJohannes Ranke1-4/+3
2014-10-12Use title case for the titleJohannes Ranke1-2/+2
Tried to adhere to the Chicago Manual of Style, but am not sure about "with".
2014-10-11Start new development versionJohannes Ranke2-1/+3
2014-10-11Updated vignettes by building static documentationJohannes Ranke3-97/+111
2014-10-11Updates intended for releasing mkin 0.9-33Johannes Ranke2-1/+3
2014-10-06Avoid a warning produced by initial fits in gmkinJohannes Ranke2-8/+11
2014-08-30Change to https to avoid messages about leaving secured groundsJohannes Ranke1-1/+1
2014-08-30Correct the link to KinGUIIJohannes Ranke1-1/+1
2014-08-30Add a link to the KinGUII websiteJohannes Ranke1-1/+2
2014-08-29Avoid an unnecessary warningJohannes Ranke2-5/+5
2014-08-25Bug fix and unit tests for mkinerrminJohannes Ranke9-98/+146
See NEWS.md for details
2014-08-25Remove intermediate vignette files when cleaningJohannes Ranke1-0/+1
2014-08-20Fix mkinfit for a special situationJohannes Ranke3-8/+10
See NEWS.md: When the parent was not the (only) variable with the highest value out of all variables in the observed data, it could happen that the initial value (state.ini) was not initialised.
2014-08-20Update NEWS with change from yesterdayJohannes Ranke1-0/+6
2014-08-19Small reformulationsJohannes Ranke1-6/+5
2014-08-19Improve formatting of differential equations in outputJohannes Ranke5-4/+5
Rebuild of FOCUS_Z vignette with improved formatting
2014-08-02More to do, gathered during the software validation checksJohannes Ranke1-0/+2
2014-07-31More to do, gathered during the software validation checksJohannes Ranke1-0/+5

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