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2021-02-15Don't let pkgdown add release datesJohannes Ranke4-99/+57
It didn't pick up the release of 1.0.3, and most of the other release dates were duplicated.
2021-02-15Update README.htmlJohannes Ranke1-2/+3
2021-02-15Correct grant numbers in README, update docsJohannes Ranke9-35/+37
2021-02-15Fully rebuild docs, rerun tests and checkJohannes Ranke183-739/+1020
2021-02-15Merge branch 'master' into saemixJohannes Ranke201-1096/+1551
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke202-1097/+1553
Also bump version to 1.0.3.
2021-02-13Update static docsJohannes Ranke2-6/+16
2021-02-13Structure NEWS entryJohannes Ranke1-0/+4
2021-02-13Rebuild docsJohannes Ranke1-1/+1
2021-02-13Update docsJohannes Ranke11-41/+49
2021-02-13Merge branch 'master' into saemixJohannes Ranke20-30/+62
Run make testcheck to regenerate logs with merge conflicts
2021-02-13Post-release update of README.htmlJohannes Ranke1-2/+15
2021-02-13Update for gmkin 0.6.12v1.0.2Johannes Ranke19-24/+43
mkinfit: Keep model names stored in mkinmod objects, avoiding their loss in gmkin
2021-02-06Reintroduce interface to saemixJohannes Ranke58-3550/+4938
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-02-06Increase test tolerance for parameter comparisonsv1.0.1Johannes Ranke5-15/+18
Platform dependence also revealed after upgrade to bullseye
2021-02-06Update static docsJohannes Ranke2-90/+91
2021-02-06Address issue revealed by additional tests on CRANJohannes Ranke5-18/+9
Remove tests relying on non-convergence of the FOMC fit to the FOCUS A dataset, as this is platform dependent. After the upgrade, the fit converges on this system as well, although neither ATLAS is used, nor R was configured disabling long doubles (these were the conditions under which the tests failed on CRAN).
2021-02-04Documentation improvements, mainly fixing example codeJohannes Ranke42-217/+266
The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2021-02-04Update README.htmlJohannes Ranke1-40/+2
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke199-3097/+4966
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2021-01-25Update visual testsJohannes Ranke3-1895/+1895
2021-01-25Some more plotting improvementsJohannes Ranke3-8/+8
2021-01-25Change default ylab in plot.mkinfit, explicit ylab for plot.mmkinJohannes Ranke36-58/+62
See NEWS.md. Closes #12
2021-01-22Switch to the master branch of saemix develJohannes Ranke1-1/+1
2021-01-22We do not need to suppress saemix plots any moreJohannes Ranke2-16/+1
This makes fitting with saem within parallel::mclapply much faster and, surprisingly, much less hungry for RAM.
2021-01-11Rebuild docsJohannes Ranke14-73/+97
2021-01-06Make saemix and corresponding tests optionalJohannes Ranke16-118/+187
Address release critical check and test issues
2020-12-21plot.mixed: Possibility to overlay predictionsJohannes Ranke9-42/+95
2020-12-19Possibility to override automatic starting parameters for saemJohannes Ranke1-4/+10
2020-12-19Update docsJohannes Ranke6-17/+263
2020-12-19Dimethenamid data, normalisation optionsJohannes Ranke14-22/+254
2020-12-17Remove two skipped (on Travis) tests to reduce noiseJohannes Ranke3-217/+1
2020-12-17Another attempt to install saemixextension from my branchJohannes Ranke1-1/+1
2020-12-17nlme with varConstProp has been publishedJohannes Ranke1-4/+1
so no need to explicitly install it on Travis any more But as I reset my master branch of saemixextension to upstream we need my jr branch with the silent logLik method
2020-12-17Some package switched from git2r to gertJohannes Ranke1-0/+1
so we need libgit2-dev on the system
2020-12-16And add the second candidate modelJohannes Ranke4-1/+30
2020-12-16and update docsJohannes Ranke4-22/+19
2020-12-16Print the model not the data for D24Johannes Ranke1-1/+1
2020-12-16Add printout of d24 model and update docsJohannes Ranke12-30/+49
2020-12-15Remove leftoversJohannes Ranke1-3/+2
2020-12-11Update README for cgit.jrwb.deJohannes Ranke1-6/+54
2020-12-11Update static docsJohannes Ranke19-137/+406
2020-12-10nlme with varConstProp is releasedJohannes Ranke2-2/+5
Also fix incompatibility with saem fits from earlier mkin versions
2020-12-10Tried to find a fast test for deSolve in saemixJohannes Ranke2-2/+7
But could not find one.
2020-12-10Add a test for saemix with deSolveJohannes Ranke3-17/+32
But skip the test as it takes too long to always run
2020-12-09Make saem using mkinpredict work againJohannes Ranke4-67/+78
I threw out mclapply as it did not play well with the linear algebra routines used in the saemix code. Most of the change is actually indentation in the code creating the model function. But there is an important fix in mkinpredict which I had broken.
2020-12-09Some test fixesJohannes Ranke4-44/+11
2020-12-09Add more tests and fix HS in saemJohannes Ranke6-1224/+1318
2020-12-09Fix a test I accidentally brokeJohannes Ranke2-18/+13
2020-12-09And moreJohannes Ranke3-1/+16

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