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2020-12-09More testsJohannes Ranke1-1/+1
2020-12-02Possibility to specify random effects structuresJohannes Ranke1-17/+13
The default is pdDiag again, as we often have a small number of datasets in degradation kinetics.
2020-11-30Complete rebuild of static docs of dev versionJohannes Ranke1-2/+4
2020-11-30Log-Cholesky parameterisation as default in nlme.mmkinJohannes Ranke1-19/+28
2020-11-10Digits for summary methods, print.saem.mmkinJohannes Ranke1-3/+4
2020-11-09I do not have a parms.nlme.mmkin methodJohannes Ranke1-2/+1
2020-11-09saemix.mmkin and nlme.mmkin inherit from mixed.mmkinJohannes Ranke1-4/+5
With a plot method. The class mixed.mmkin is currently only a virtual class created to unify the plotting method.
2020-11-09Merge plot methods for nlme.mmkin and saem.mmkinJohannes Ranke1-0/+3
This avoids code duplication
2020-11-09object$mmkin_orig -> object$mmkinJohannes Ranke1-3/+3
2020-11-08Improve saem method, add summaryJohannes Ranke1-4/+11
Also make the endpoints function work for saem objects.
2020-11-05Fix link and update docsJohannes Ranke1-2/+2
2020-11-04Revert to use starting values for random effects in nlme.mmkinJohannes Ranke1-1/+1
2020-11-03Do not test residuals per default, improve nlme.mmkinJohannes Ranke1-1/+1
Do not give starting values for random effects in nlme.mmkin.
2020-10-27Add summary method for nlme.mmkin objectsJohannes Ranke1-6/+40
Improve and update docs
2020-10-26Put the legend in its own area for plot.nlme.mmkinJohannes Ranke1-0/+2
2020-10-24Fix a bug for nlme with parent only, improve examplesJohannes Ranke1-29/+8
2020-10-24Plot method for nlme.mmkin objectsJohannes Ranke1-0/+2
Update docs
2020-10-22Really fix check for nlme::varConstPropJohannes Ranke1-1/+2
And add output for nlme fit translating the mkinfit error model "obs" into nlme::varIdent().
2020-10-22Improve interface to experimental version of nlmeJohannes Ranke1-7/+55
The experimental nlme version in my drat repository contains the variance function structure varConstProp which makes it possible to use the two-component error model in generalized nonlinear models using nlme::gnls() and in mixed effects models using nlme::nlme().
2020-07-20Require upcoming nlme version, remove anova.nlme.mmkinJohannes Ranke1-29/+0
The method is no longer necessary, now that Bug 17761 is fixed upstream https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761
2020-05-12Update vignettes and docsJohannes Ranke1-1/+0
2020-04-18Fix NOTE, prepare for releasev0.9.49.10Johannes Ranke1-1/+1
2020-04-18Avoid assignment to .GlobalEnv for CRANJohannes Ranke1-8/+27
2020-04-15Adapt endpoint() to also work for nlme.mmkin objectsJohannes Ranke1-0/+5
2020-04-15Include random effects in starting parametersJohannes Ranke1-4/+96
- mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO
2020-04-15A plot method for nlme.mmkin fitsJohannes Ranke1-4/+5
2020-04-14Add a nlme method for mmkin row objectsJohannes Ranke1-0/+85

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