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Fitting kinetic models to chemical degradation data (also on github)
Johannes Ranke
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2023-03-15
Start parms and endpoints for covariates
Johannes Ranke
2
-3
/
+13
2023-02-26
Improve documentation of the format
Johannes Ranke
1
-2
/
+19
2023-02-23
Basic check if covariate data are usable
Johannes Ranke
1
-4
/
+11
2023-02-17
Update online docs, fix bug that surfaced
Johannes Ranke
1
-5
/
+6
2023-02-17
Finish adapting to upcoming deSolve
Johannes Ranke
4
-24
/
+19
2023-02-17
Merge remote-tracking branch 'origin/main' into faster_lsoda
Johannes Ranke
1
-4
/
+3
2023-02-13
Update mmkin docs, parallel is not loaded any more
Johannes Ranke
1
-4
/
+3
2023-02-13
WIP adapting to new deSolve with faster lsoda
Johannes Ranke
2
-83
/
+20
2023-02-13
Merge branch 'main' into custom_lsoda_call
Johannes Ranke
15
-78
/
+277
2023-01-09
Prebuilt PDF vignettes, summary_listing
Johannes Ranke
3
-33
/
+60
2023-01-05
Don't preschedule multistart runs
Johannes Ranke
1
-2
/
+5
2023-01-04
Update documentation of 'use_of_ff' argument
Johannes Ranke
1
-1
/
+1
2023-01-03
Improved skeleton for hierarchical fits
Johannes Ranke
1
-0
/
+1
2023-01-02
Fix no_random_effect with character vector
Johannes Ranke
1
-1
/
+1
2023-01-02
Echo R code per default in markdown template
Johannes Ranke
1
-1
/
+1
2022-12-19
Rename template folder, create format
Johannes Ranke
2
-1
/
+40
2022-12-15
List random effects correlations in output if any
Johannes Ranke
2
-4
/
+20
2022-12-07
Fix parplot for the case of failed multistart runs
Johannes Ranke
2
-2
/
+2
2022-12-07
Check slopes in saemix covariate models
Johannes Ranke
1
-1
/
+13
2022-12-06
Some parplot improvements
Johannes Ranke
1
-4
/
+12
2022-12-02
Avoid redundant warnings in summaries
Johannes Ranke
1
-2
/
+3
2022-12-01
Possibility to manually specify no_random_effects in mhmkin
Johannes Ranke
1
-20
/
+71
2022-11-29
Complete starting values in summary for saem.mmkin fits
Johannes Ranke
1
-1
/
+10
2022-11-25
mhmkin: Easy specification of ill-defined parms
Johannes Ranke
1
-18
/
+20
2022-11-18
Make mixed model test data permanent to ensure reproducibility
Johannes Ranke
1
-0
/
+17
2022-11-18
Pass error.init to saemix_model, show in parplot
Johannes Ranke
2
-5
/
+17
2022-11-18
Improve logLik.mkinfit to attach nobs attribute
Johannes Ranke
1
-0
/
+1
2022-11-16
Read in all data per default
Johannes Ranke
1
-1
/
+1
2022-11-16
We get about 25% performance gain
Johannes Ranke
5
-33
/
+131
2022-11-15
Import saemix for easier profiling, update online docs
Johannes Ranke
1
-1
/
+2
2022-11-14
Automatic starting parameters for saem.mmkin
Johannes Ranke
1
-1
/
+28
2022-11-08
Same SFORB simplification for saem.mmkin fits
Johannes Ranke
1
-2
/
+2
2022-11-08
Show DFOP g equivalent of SFORB in summary, test
Johannes Ranke
2
-8
/
+11
2022-11-08
Simplify SFORB also in the endpoint function
Johannes Ranke
1
-11
/
+10
2022-11-08
Simplify SFORB analytical solution, whitespace
Johannes Ranke
1
-64
/
+64
2022-11-07
Make print and summary for saem.mmkin more robust
Johannes Ranke
2
-8
/
+18
2022-11-04
Further improvement of robustness of anova method
Johannes Ranke
1
-9
/
+9
2022-11-04
Fix anova.saem.mmkin for unavailable likelihoods
Johannes Ranke
1
-4
/
+10
2022-11-04
Attempt at automatic setting of random effects
Johannes Ranke
1
-4
/
+24
2022-11-04
Make it easy to override maxsteps for lsoda
Johannes Ranke
1
-23
/
+26
2022-11-04
Make illparms.mhmkin and anova.saem.mmkin more robust
Johannes Ranke
3
-12
/
+14
2022-11-04
Never fail with errors in saem.mmkin
Johannes Ranke
1
-6
/
+0
2022-11-01
Add tex_listing()
Johannes Ranke
1
-0
/
+32
2022-11-01
Add read_spreadsheet
Johannes Ranke
1
-0
/
+113
2022-11-01
Fix plotting saem fits with covariates
Johannes Ranke
2
-47
/
+72
2022-11-01
Fix a bug, couldn't set class attribute on NULL
Johannes Ranke
1
-1
/
+1
2022-11-01
Fix illparms tests
Johannes Ranke
1
-1
/
+1
2022-11-01
Improved printing for illparms()
Johannes Ranke
1
-4
/
+20
2022-10-31
Fix R CMD check
Johannes Ranke
1
-3
/
+5
2022-10-31
Possibility to override the error model in update.saem
Johannes Ranke
2
-11
/
+14
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