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2022-11-17Complete update of online docs for v1.2.0Johannes Ranke1-33/+42
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-1/+1
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-164/+113
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-12/+12
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-34/+47
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-15/+15
2020-05-12Update vignettes and docsJohannes Ranke1-56/+53
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke1-10/+6
2019-09-18Correct and rebuild docsJohannes Ranke1-10/+22
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-2/+2
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-07Fix hessian calculationsJohannes Ranke1-18/+36
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke1-36/+18
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke1-17/+17
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Better initials for error model parametersJohannes Ranke1-8/+8
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-34/+36
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-03-04Review tests and examples based on winbuilder resultsJohannes Ranke1-1/+1
Static documentation rebuilt by pkgdown
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-0/+3
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-1/+1
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-01-31Restore NAMESPACEJohannes Ranke1-4/+44
which was accidentally overwritten by pkgdown -> roxygen
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke1-56/+17
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke1-1/+1
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke1-3/+3
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-14Exclude more example code from CRAN checksJohannes Ranke1-17/+45
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
2018-09-14Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
Also update test log
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke1-1/+1
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-06-06Static documentation rebuilt by pkgdown 1.1.0Johannes Ranke1-5/+22
2018-03-11Static docs rebuilt again, with current pkgdownJohannes Ranke1-0/+6
2018-03-09Another rebuild of the static docsJohannes Ranke1-5/+0
Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01Static documentation rebuilt using current pkgdown::build_site()Johannes Ranke1-46/+24
2018-02-06Skip some tests on CRAN, more quiet examplesv0.9.47.1Johannes Ranke1-206/+6
2018-01-07Don't run water sediment example to reduce time neededJohannes Ranke1-1/+3
Static documentation except articles rebuilt by pkgdown
2018-01-05Convert synthetic_data_for_UBA_2014 to mkindsJohannes Ranke1-2/+2
Static documentation except articles rebuilt by pkgdown
2018-01-05Experimental test data from UBA 2014 expertiseJohannes Ranke1-0/+411
- Typo in synthetic data for UBA - Static documentation except articles rebuilt by pkgdown

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