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2023-08-10Merge branch 'main' into devJohannes Ranke22-73/+2645
Start new development version
2023-08-09Update static docsv1.2.5Johannes Ranke22-73/+2645
2023-05-19Release date, update pkgdown development docsJohannes Ranke107-486/+629
2023-05-19Prepare release of v1.2.4v1.2.4Johannes Ranke168-2745/+2530
- Update DESCRIPTION - Update Makefile to document how to use R-patched - Remove markup from two URLs to avoid CRAN NOTE - Switch two vignettes from html_document to html_vignette to save space in the docs directory, also avoiding a CRAN NOTE - Complete rebuild of pkgdown docs for release
2023-04-20Update vignettes in dev docsJohannes Ranke29-258/+339
After the post-release fixes to the release version online docs
2023-04-20Merge branch 'v1.2.3_pkgdown'Johannes Ranke259-1741/+15123
2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke259-1741/+15123
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2023-04-17Improve docs of multistart methodJohannes Ranke17-128/+56
2023-04-16Complete rebuild of static docsJohannes Ranke211-1253/+3513
2023-02-18Mention recent case studies in READMEJohannes Ranke2-3/+4
2023-02-17Update online docs, fix bug that surfacedJohannes Ranke39-289/+744
2023-01-28Update saem benchmark with new CPUJohannes Ranke2-22/+123
2023-01-28Some improvements to the READMEJohannes Ranke2-3/+3
2023-01-28Build online HTML versions of prebuilt vignettesJohannes Ranke38-40/+9994
Also, give some structure to the menu for selecting articles
2023-01-09Prebuilt PDF vignettes, summary_listingJohannes Ranke32-33/+2836
2022-12-15List random effects correlations in output if anyJohannes Ranke9-258/+377
Update docs
2022-12-02Update online docsJohannes Ranke2-2/+2
2022-12-02Update online docsJohannes Ranke7-14/+95
2022-11-24Start online docs of the development versionJohannes Ranke178-8343/+7032
2022-11-18Use cluster with two cores to reduce windows check timeJohannes Ranke2-2/+3
2022-11-18Update docsJohannes Ranke14-18/+279
2022-11-17Complete update of online docs for v1.2.0Johannes Ranke160-4181/+7909
2022-11-16Update docsJohannes Ranke3-7/+10
2022-11-16Update online docsJohannes Ranke6-127/+183
2022-11-15Import saemix for easier profiling, update online docsJohannes Ranke7-37/+52
2022-11-14Add saem benchmarks to indexJohannes Ranke6-6/+21
2022-11-14Update online docsJohannes Ranke34-1704/+1760
2022-11-03Update docsJohannes Ranke6-1/+333
2022-11-01Update online docsJohannes Ranke29-176/+275
2022-10-29Merge branch 'update_online_docs_v1.1.1'Johannes Ranke1-56/+62
2022-10-29Rebuild vignette with rbenchmark installedJohannes Ranke1-56/+62
2022-10-29Update multistart docsJohannes Ranke18-25/+376
2022-10-26Update multistart example code and vignetteJohannes Ranke11-23/+35
2022-10-26Don't test parhist and llhist on travis, docsJohannes Ranke16-66/+722
2022-10-05Simplify the removal of random effectsJohannes Ranke1-1/+1
This is achieved by introducing the argument 'no_random_effect' to the saem function.
2022-09-28Update vignette and static docsJohannes Ranke5-19/+44
2022-09-19Improve parhist and llhistJohannes Ranke6-18/+13
In particular, adapt the display of parameter boxplots for saem fits using mkin transformations to the way used for saem fits using saemix transformations, i.e. always show parameters on the natural scale, and normalised them by dividing by the median from the multiple runs.
2022-09-16Add llhist to the multistart vignetteJohannes Ranke3-1/+9
2022-09-16Improve multistart documentation, bugfixJohannes Ranke14-27/+576
- Split out llhist and parhist documentation - Add example code for multistart - Create a multistart vignette, because the example code fails when run by pkgdown - Fix multistart for the case of mkin transformations in the saem fit
2022-09-16Improve docs and update pkgdownJohannes Ranke16-414/+526
2022-08-10Update dev docsJohannes Ranke2-2/+2
2022-08-10Change dev branch used for docs, update static docsJohannes Ranke73-4156/+5578
2022-08-10Update docsJohannes Ranke3-262/+348
2022-08-10Update static docsJohannes Ranke15-277/+655
2022-07-22Update static docsJohannes Ranke13-50/+648
2022-07-12Rerun benchmarks on desktop computerJohannes Ranke2-2/+31
2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke11-649/+673
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-07-01Sensitivity of AIC values in DMTA vignette to BLAS versionJohannes Ranke8-145/+190
2022-07-01Update benchmark article in online docsJohannes Ranke2-65/+65
2022-07-01Add R version to data in benchmark vignetteJohannes Ranke12-263/+434

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