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2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-8/+5
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-09Avoid the call to merge for analytical solutionsJohannes Ranke1-15/+20
This increases performance up to a factor of five!
2020-05-07Another overhaul of analytical solutionsJohannes Ranke1-11/+11
Still in preparation for analytical solutions of coupled models
2020-05-06Change implementation of analytical solutionsJohannes Ranke1-51/+57
Preparing for symbolic solutions for more than one compound
2020-03-30First nlme fits for models with a metaboliteJohannes Ranke1-16/+41
2019-10-25Use roxygen for functions and methodsJohannes Ranke1-64/+69
2018-09-18Make mkinpredict generic and write a method for fitsJohannes Ranke1-16/+26
2016-11-17Remove trailing whitespace, clean headersJohannes Ranke1-13/+13
Also ignore test.R in the top level directory, as it is not meant to be public
2016-06-24TypoJohannes Ranke1-1/+1
2015-04-18Add a vignette showing the performance of compiled modelsJohannes Ranke1-1/+1
2015-04-16Check compiled mkinmod versions in examples and testsJohannes Ranke1-1/+23
Tests all pass (Linux)
2014-07-14Nearly complete support for IORE, pending mkinerrminJohannes Ranke1-7/+12
2013-12-04Make it possible to use different ode solvers=1-6/+11
2013-10-11Some additions, fixes and formatting of the help files for mkinfit and ↵jranke1-21/+22
mkinpredict. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@110 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-09-25- Fixed the NOTES listed by R CMD checkjranke1-11/+22
Candidate for publication on CRAN git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@97 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-04Small updates of two mkin help filesjranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@73 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-07-03- Add rtol argument in order to increase the precision of deSolve basedjranke1-12/+17
predictions for complex models - Improve default values for atol and set rtol default to 1e-10 git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@49 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-05-07- Moved the call to mkinerrmin to summary.mkinfitjranke1-1/+1
- The argument to mkinerrmin is now an object of class mkinfit - Fixed the allocation of parameters to observed variables in mkinerrmin git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@37 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-04-23- Fixed the example in the mkinmod documentationjranke1-5/+11
- Fixed the vignette - Did not fix the unit tests for mkinmod yet git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@31 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-04-10- Fitting and summaries now work with the new parameter transformations.jranke1-0/+63
- The SFORB models with metabolites is broken (see TODO) - Moved the vignette to the location recommended since R 2.14 - Added the missing documentation - Commented out the schaefer_complex_case test, as this version of mkin is not able to fit a model without sink and therefore mkin estimated parameters are quite different git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@22 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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