aboutsummaryrefslogtreecommitdiff
path: root/man/mmkin.Rd
AgeCommit message (Collapse)AuthorFilesLines
2021-02-04Documentation improvements, mainly fixing example codeJohannes Ranke1-1/+6
The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2020-11-19Depend on parallel, doc improvementsJohannes Ranke1-0/+11
By depending on parallel instead of importing it, functions to set up and stop a cluster are always available when mkin is loaded. The use of multicore processing in mmkin on Windows is now documented in the help file, which brings mkin closer to a version 1.0 #9.
2020-11-06Fast analytical solutions for saemix, update.mmkinJohannes Ranke1-1/+1
Also, use logit transformation for g and for solitary formation fractions, addressing #10.
2020-07-15Improve testsJohannes Ranke1-2/+3
- Reduce significant digits for the objective function output in mkinfit(..., quiet = FALSE) as R and R-devel gave different output on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis
2020-05-26Use all cores per default, confint toleranceJohannes Ranke1-2/+3
Also, use more intelligent starting values for the variance of the random effects for saemix. While this does not appear to speed up the convergence, it shows where this variance is greatly reduced by using mixed-effects models as opposed to the separate independent fits.
2020-05-12Documentation improvements, rebuild static docsJohannes Ranke1-3/+3
2020-04-07Add some tests for the nlme convenience functionsJohannes Ranke1-2/+3
2020-03-30First nlme fits for models with a metaboliteJohannes Ranke1-3/+8
2019-10-25Use roxygen for functions and methodsJohannes Ranke1-39/+37
2018-03-21Give a bit more advice on multicore use on WindowsJohannes Ranke1-1/+3
2016-11-18Improve examples for showing with pkgdownJohannes Ranke1-5/+6
- Use quiet= TRUE in dontrun sections - Use mkinsub in model definitions - Avoid \code{\link{}} in titles
2016-11-17Remove trailing whitespace, clean headersJohannes Ranke1-2/+2
Also ignore test.R in the top level directory, as it is not meant to be public
2016-06-27Show chi2 in plot.mkinfit, round with signifJohannes Ranke1-3/+6
2016-06-25Fix the plot margins for combined plotsJohannes Ranke1-6/+9
2016-06-25Working state, but not backwards compatibleJohannes Ranke1-1/+7
In this commit, the separatation of plots for observed variables works. The formatting should be improved. However, in gmkin, plotting with show_residuals = TRUE is used, and the GUI expects that the residual plot is below the main plot. This behaviour should be restored.
2015-06-29Quiet fitting in examples and more links for static docs.Johannes Ranke1-2/+5
2015-06-26Subsetting and plotting for mmkin objectsJohannes Ranke1-3/+3
Including documentation and documentation improvements for mmkin().
2015-06-25Fix fitting with parLapply, doc fixJohannes Ranke1-0/+1
2015-06-25Add mmkin for testingJohannes Ranke1-0/+64

Contact - Imprint