mkin - Fitting kinetic models to chemical degradation data (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2023-02-17	Finish adapting to upcoming deSolve	Johannes Ranke	1	-4/+3

2021-04-21	Version 1.0.4 published yesterdayv1.0.4	Johannes Ranke	1	-2/+3

2021-02-04	Documentation improvements, mainly fixing example code	Johannes Ranke	1	-1/+6
	The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2020-11-19	Depend on parallel, doc improvements	Johannes Ranke	1	-0/+11
	By depending on parallel instead of importing it, functions to set up and stop a cluster are always available when mkin is loaded. The use of multicore processing in mmkin on Windows is now documented in the help file, which brings mkin closer to a version 1.0 #9.
2020-11-06	Fast analytical solutions for saemix, update.mmkin	Johannes Ranke	1	-1/+1
	Also, use logit transformation for g and for solitary formation fractions, addressing #10.
2020-07-15	Improve tests	Johannes Ranke	1	-2/+3
	- Reduce significant digits for the objective function output in mkinfit(..., quiet = FALSE) as R and R-devel gave different output on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis
2020-05-26	Use all cores per default, confint tolerance	Johannes Ranke	1	-2/+3
	Also, use more intelligent starting values for the variance of the random effects for saemix. While this does not appear to speed up the convergence, it shows where this variance is greatly reduced by using mixed-effects models as opposed to the separate independent fits.
2020-05-12	Documentation improvements, rebuild static docs	Johannes Ranke	1	-3/+3

2020-04-07	Add some tests for the nlme convenience functions	Johannes Ranke	1	-2/+3

2020-03-30	First nlme fits for models with a metabolite	Johannes Ranke	1	-3/+8

2019-10-25	Use roxygen for functions and methods	Johannes Ranke	1	-39/+37

2018-03-21	Give a bit more advice on multicore use on Windows	Johannes Ranke	1	-1/+3

2016-11-18	Improve examples for showing with pkgdown	Johannes Ranke	1	-5/+6
	- Use quiet= TRUE in dontrun sections - Use mkinsub in model definitions - Avoid \code{\link{}} in titles
2016-11-17	Remove trailing whitespace, clean headers	Johannes Ranke	1	-2/+2
	Also ignore test.R in the top level directory, as it is not meant to be public
2016-06-27	Show chi2 in plot.mkinfit, round with signif	Johannes Ranke	1	-3/+6

2016-06-25	Fix the plot margins for combined plots	Johannes Ranke	1	-6/+9

2016-06-25	Working state, but not backwards compatible	Johannes Ranke	1	-1/+7
	In this commit, the separatation of plots for observed variables works. The formatting should be improved. However, in gmkin, plotting with show_residuals = TRUE is used, and the GUI expects that the residual plot is below the main plot. This behaviour should be restored.
2015-06-29	Quiet fitting in examples and more links for static docs.	Johannes Ranke	1	-2/+5

2015-06-26	Subsetting and plotting for mmkin objects	Johannes Ranke	1	-3/+3
	Including documentation and documentation improvements for mmkin().
2015-06-25	Fix fitting with parLapply, doc fix	Johannes Ranke	1	-0/+1

2015-06-25	Add mmkin for testing	Johannes Ranke	1	-0/+64