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2020-11-06Fast analytical solutions for saemix, update.mmkinJohannes Ranke1-157/+192
Also, use logit transformation for g and for solitary formation fractions, addressing #10.
2020-07-15Improve testsJohannes Ranke1-44/+44
- Reduce significant digits for the objective function output in mkinfit(..., quiet = FALSE) as R and R-devel gave different output on my system - Add makefile target 'devtest' for testing with R-devel, in order to fix problems showing up with R-devel on Travis
2020-05-11Analytical solutions for all SFO variantsJohannes Ranke1-1/+1
2020-05-11Reduce precision of traced parameters, formattingJohannes Ranke1-121/+121
2020-03-31Static documentation rebuilt by pkgdownJohannes Ranke1-2/+2
2019-10-21Refactor mkinfit, infrastructure workJohannes Ranke1-1/+1
mkinfit objects now include an ll() function to calculate the log-likelihood. Part of the code was refactored, hopefully making it easier to read and maintain. IRLS is currently the default algorithm for the error model "obs", for no particular reason. This may be subject to change when I get around to investigate. Slow tests are now in a separate subdirectory and will probably only be run by my own Makefile target. Formatting of test logs is improved. Roundtripping error model parameters works with a precision of 10% when we use lots of replicates in the synthetic data (see slow tests). This is not new in this commit, but as I think it is reasonable this closes #7.
2019-05-07Fix hessian calculationsJohannes Ranke1-245/+0
Static documentation rebuilt by pkgdown
2019-05-02Better initials for error model parametersJohannes Ranke1-1/+1
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-24Improve output and update testsJohannes Ranke1-45/+45
Remove skipped tests as I do not intend to reactivate them
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-152/+292
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-02-27Increase test coverageJohannes Ranke1-0/+270

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