Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2019-04-04 | Direct error model fitting works | Johannes Ranke | 1 | -160/+1514 | |
- No IRLS required - Removed optimization algorithms other than Port - Removed the dependency on FME - Fitting the error model 'obs' is much faster for the FOCUS_2006_D dataset and the FOMC_SFO model (1 second versus 3.4 seconds) - Vignettes build slower. Compiled models needs 3 minutes instead of 1.5 - For other vignettes, the trend is less clear. Some fits are faster, even for error_model = "const". FOCUS_Z is faster (34.9 s versus 44.1 s) - Standard errors and confidence intervals are slightly smaller - Removed code for plotting during the fit, as I hardly ever used it - Merged the two cost functions (using transformed and untransformed parameters) into one log-likelihood function | |||||
2018-07-18 | Correct references to the Rocke and Lorenzato model | Johannes Ranke | 1 | -434/+337 | |
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation. | |||||
2018-03-01 | Static documentation rebuilt using current pkgdown::build_site() | Johannes Ranke | 1 | -345/+437 | |
2018-01-14 | Load mkin quietly in vignettes | Johannes Ranke | 1 | -40/+40 | |
Static documentation articles rebuilt by pkgdown::build_articles() | |||||
2017-07-21 | Fix another URL, vignette builder, rebuild | Johannes Ranke | 1 | -45/+45 | |
2017-05-05 | Static docs except articles rebuilt with current pkgdown | Johannes Ranke | 1 | -53/+53 | |
2016-11-18 | Fix links in README, configure navbar, rebuild docs | Johannes Ranke | 1 | -27/+27 | |
2016-11-17 | Rebuild | Johannes Ranke | 1 | -32/+32 | |
2016-11-17 | Improve yaml header, remove trailing whitespace | Johannes Ranke | 1 | -48/+58 | |
Now the year is showing in the reference, and the TOC is not collapsed. | |||||
2016-10-22 | Update way to specify encoding, improve FOCUS_L TOC | Johannes Ranke | 1 | -50/+56 | |
2016-09-28 | Add drat target and rebuild for drat | Johannes Ranke | 1 | -0/+830 | |
2016-09-10 | Static documentation rebuilt with current staticdocs | Johannes Ranke | 1 | -830/+0 | |
Using hadley/staticdocs commit #8c1069d from 8 days ago | |||||
2016-09-10 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 1 | -31/+32 | |
2016-06-28 | Bump version for new release, rebuild static docs | Johannes Ranke | 1 | -28/+28 | |
The test test_FOMC_ill-defined leads to errors on several architectures/distributions, as apparent from CRAN checks, so we need a new release. Static documentation rebuilt by staticdocs::build_site() | |||||
2016-06-28 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 1 | -28/+28 | |
2016-06-28 | Attempts to reduce vignette size | Johannes Ranke | 1 | -30/+30 | |
Reducing the size of some figures and switching of retina figures in the preamble only gives a small decrease in vignette size, but may be enough to get the size of the doc directory below 5 MB to avoid the NOTE in the corresponding check (which I did not get locally, nor on winbuilder using r-devel. | |||||
2016-06-28 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 1 | -20/+20 | |
2016-06-28 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 1 | -21/+21 | |
2016-06-28 | Avoid multicore fits in vignettes for passing CRAN checks | Johannes Ranke | 1 | -32/+34 | |
Also a small fix to the FOCUS Z vignette, and an update of the static documentation generated by staticdocs. | |||||
2016-06-27 | Complete mkin vignette, update FOCUS L vignette | Johannes Ranke | 1 | -341/+301 | |
The mkin vignette now describes how confidence intervals and the t-test are calculated. The FOCUS L vignette is updated with the new floating toc provided by the current rmarkdown package, and also uses current, improved mkin functionality. | |||||
2016-03-24 | Static documentation rebuilt by staticdocs::build_site()v0.9.42 | Johannes Ranke | 1 | -82/+82 | |
2016-03-23 | Added 'from_max_mean' to 'mkinfit'. | Johannes Ranke | 1 | -10/+10 | |
- Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel | |||||
2015-12-09 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 1 | -2/+2 | |
2015-11-13 | Add plots to compiled_models vignette, rebuild staticdocs | Johannes Ranke | 1 | -2/+2 | |
2015-11-09 | Rebuild vignettes and static documentation | Johannes Ranke | 1 | -2/+2 | |
2015-11-09 | Export print.mkinds and rebuild vignettes | Johannes Ranke | 1 | -2/+2 | |
2015-07-21 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 1 | -2/+2 | |
r-forge | |||||
2015-07-20 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 1 | -32/+32 | |
r-forge | |||||
2015-07-20 | Avoid error message for SFORB in endpoints, updates | Johannes Ranke | 1 | -44/+44 | |
2015-06-26 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-39 | Johannes Ranke | 1 | -30/+30 | |
r-forge | |||||
2015-06-26 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 1 | -37/+32 | |
r-forge | |||||
2015-06-26 | Pass R CMD check --as-cran, vignette rebuild | Johannes Ranke | 1 | -44/+49 | |
2015-06-23 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-38 | Johannes Ranke | 1 | -39/+39 | |
r-forge | |||||
2015-06-23 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-37 | Johannes Ranke | 1 | -30/+30 | |
r-forge | |||||
2015-06-23 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 1 | -29/+29 | |
r-forge | |||||
2015-06-23 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 1 | -30/+30 | |
r-forge | |||||
2015-06-22 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 1 | -30/+30 | |
r-forge | |||||
2015-06-22 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 1 | -30/+30 | |
r-forge | |||||
2015-06-22 | Vignettes rebuilt by staticdocs::build_site() for r-forge | Johannes Ranke | 1 | -36/+32 | |
2015-06-22 | Version bump, correct benchmark in vignette/compiled_models | Johannes Ranke | 1 | -479/+205 | |
Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed. | |||||
2015-06-21 | Rebuild vignettes with the released package installed | Johannes Ranke | 1 | -30/+30 | |
2015-06-21 | Vignettes as rebuilt for the static documentation for r-forge | Johannes Ranke | 1 | -30/+30 | |
2015-06-21 | Do the t-test for untransformed parametersv0.9-36 | Johannes Ranke | 1 | -169/+188 | |
2015-04-16 | Pending commit of an updated vignette | Johannes Ranke | 1 | -77/+76 | |
2014-12-18 | Updated vignettes during staticdoc generation | Johannes Ranke | 1 | -30/+30 | |
2014-11-21 | Update date and static docs for release to CRANv0.9-34 | Johannes Ranke | 1 | -277/+271 | |
2014-10-15 | Switch to using the Port algorithm per default | Johannes Ranke | 1 | -62/+73 | |
2014-10-14 | Further formatting improvement for differential equations | Johannes Ranke | 1 | -45/+51 | |
2014-10-11 | Updated vignettes by building static documentation | Johannes Ranke | 1 | -97/+111 | |
2014-08-25 | Bug fix and unit tests for mkinerrmin | Johannes Ranke | 1 | -51/+61 | |
See NEWS.md for details |