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<h1>Export a list of datasets format to a CAKE study file</h1>
<small class="dont-index">Source: <a href='https://github.com/jranke/mkin/blob/master/R/CAKE_export.R'><code>R/CAKE_export.R</code></a></small>
<div class="hidden name"><code>CAKE_export.Rd</code></div>
</div>
<div class="ref-description">
<p>In addition to the datasets, the pathways in the degradation model can be
specified as well.</p>
</div>
<pre class="usage"><span class='fu'>CAKE_export</span><span class='op'>(</span>
<span class='va'>ds</span>,
map <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span>parent <span class='op'>=</span> <span class='st'>"Parent"</span><span class='op'>)</span>,
links <span class='op'>=</span> <span class='cn'>NA</span>,
filename <span class='op'>=</span> <span class='st'>"CAKE_export.csf"</span>,
path <span class='op'>=</span> <span class='st'>"."</span>,
overwrite <span class='op'>=</span> <span class='cn'>FALSE</span>,
study <span class='op'>=</span> <span class='st'>"Codlemone aerobic soil degradation"</span>,
description <span class='op'>=</span> <span class='st'>""</span>,
time_unit <span class='op'>=</span> <span class='st'>"days"</span>,
res_unit <span class='op'>=</span> <span class='st'>"% AR"</span>,
comment <span class='op'>=</span> <span class='st'>"Created using mkin::CAKE_export"</span>,
date <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/Sys.time.html'>Sys.Date</a></span><span class='op'>(</span><span class='op'>)</span>,
optimiser <span class='op'>=</span> <span class='st'>"IRLS"</span>
<span class='op'>)</span></pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>ds</th>
<td><p>A named list of datasets in long format as compatible with
<code><a href='mkinfit.html'>mkinfit</a></code>.</p></td>
</tr>
<tr>
<th>map</th>
<td><p>A character vector with CAKE compartment names (Parent, A1, ...),
named with the names used in the list of datasets.</p></td>
</tr>
<tr>
<th>links</th>
<td><p>An optional character vector of target compartments, named with
the names of the source compartments. In order to make this easier, the
names are used as in the datasets supplied.</p></td>
</tr>
<tr>
<th>filename</th>
<td><p>Where to write the result. Should end in .csf in order to be
compatible with CAKE.</p></td>
</tr>
<tr>
<th>path</th>
<td><p>An optional path to the output file.</p></td>
</tr>
<tr>
<th>overwrite</th>
<td><p>If TRUE, existing files are overwritten.</p></td>
</tr>
<tr>
<th>study</th>
<td><p>The name of the study.</p></td>
</tr>
<tr>
<th>description</th>
<td><p>An optional description.</p></td>
</tr>
<tr>
<th>time_unit</th>
<td><p>The time unit for the residue data.</p></td>
</tr>
<tr>
<th>res_unit</th>
<td><p>The unit used for the residues.</p></td>
</tr>
<tr>
<th>comment</th>
<td><p>An optional comment.</p></td>
</tr>
<tr>
<th>date</th>
<td><p>The date of file creation.</p></td>
</tr>
<tr>
<th>optimiser</th>
<td><p>Can be OLS or IRLS.</p></td>
</tr>
</table>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>The function is called for its side effect.</p>
<h2 class="hasAnchor" id="author"><a class="anchor" href="#author"></a>Author</h2>
<p>Johannes Ranke</p>
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