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<h1>Export a list of datasets in wide format to a CAKE study file</h1>
<div class="hidden name"><code>CAKE_export.Rd</code></div>
</div>
<div class="ref-description">
<p>In addition to the datasets, the pathways in the degradation
model can be specified as well.</p>
</div>
<pre class="usage"><span class='fu'>CAKE_export</span>(<span class='no'>ds</span>, <span class='kw'>map</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='st'>"Parent"</span>),
<span class='kw'>links</span> <span class='kw'>=</span> <span class='fl'>NA</span>,
<span class='kw'>filename</span> <span class='kw'>=</span> <span class='st'>"CAKE_export.csf"</span>, <span class='kw'>path</span> <span class='kw'>=</span> <span class='st'>"."</span>, <span class='kw'>overwrite</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
<span class='kw'>study</span> <span class='kw'>=</span> <span class='st'>"Codlemone aerobic soil degradation"</span>,
<span class='kw'>description</span> <span class='kw'>=</span> <span class='st'>""</span>,
<span class='kw'>time_unit</span> <span class='kw'>=</span> <span class='st'>"days"</span>,
<span class='kw'>res_unit</span> <span class='kw'>=</span> <span class='st'>"% AR"</span>,
<span class='kw'>comment</span> <span class='kw'>=</span> <span class='st'>"Created using mkin::CAKE_export"</span>,
<span class='kw'>date</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/Sys.time'>Sys.Date</a></span>(),
<span class='kw'>optimiser</span> <span class='kw'>=</span> <span class='st'>"IRLS"</span>)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>ds</th>
<td><p>A named list of datasets in long format as compatible with
<code><a href='mkinfit.html'>mkinfit</a></code>.</p></td>
</tr>
<tr>
<th>map</th>
<td><p>A character vector with CAKE compartment names (Parent, A1, ...),
named with the names used in the list of datasets.</p></td>
</tr>
<tr>
<th>links</th>
<td><p>An optional character vector of target compartments, named with
the names of the source compartments. In order to make this
easier, the names are used as in the datasets supplied.</p></td>
</tr>
<tr>
<th>filename</th>
<td><p>Where to write the result. Should end in .csf in order to be compatible
with CAKE.</p></td>
</tr>
<tr>
<th>path</th>
<td><p>An optional path to the output file.</p></td>
</tr>
<tr>
<th>overwrite</th>
<td><p>If TRUE, existing files are overwritten.</p></td>
</tr>
<tr>
<th>study</th>
<td><p>The name of the study.</p></td>
</tr>
<tr>
<th>description</th>
<td><p>An optional description.</p></td>
</tr>
<tr>
<th>time_unit</th>
<td><p>The time unit for the residue data.</p></td>
</tr>
<tr>
<th>res_unit</th>
<td><p>The unit used for the residues.</p></td>
</tr>
<tr>
<th>comment</th>
<td><p>An optional comment.</p></td>
</tr>
<tr>
<th>date</th>
<td><p>The date of file creation.</p></td>
</tr>
<tr>
<th>optimiser</th>
<td><p>Can be OLS or IRLS.</p></td>
</tr>
</table>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>The function is called for its side effect.</p>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#arguments">Arguments</a></li>
<li><a href="#value">Value</a></li>
</ul>
<h2>Author</h2>
<p>Johannes Ranke</p>
</div>
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