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\name{mkinsub}
\alias{mkinsub}
\title{
Function to set up a kinetic submodel for one state variable
}
\description{
This is a convenience function to set up the lists used as arguments for
\code{\link{mkinmod}}.
}
\usage{
mkinsub(submodel, to = NULL, sink = TRUE, full_name = NA)
}
\arguments{
\item{submodel}{
Character vector of length one to specify the submodel type. See
\code{\link{mkinmod}} for the list of allowed submodel names.
}
\item{to}{
Vector of the names of the state variable to which a transformation
shall be included in the model.
}
\item{sink}{
Should a pathway to sink be included in the model in addition to the
pathways to other state variables?
}
\item{full_name}{
An optional name to be used e.g. for plotting fits performed with the model.
You can use non-ASCII characters here, but then your R code will not be
portable, \emph{i.e.} may produce unintended plot results on other
operating systems or system configurations.
}
}
\value{
A list for use with \code{\link{mkinmod}}.
}
\author{
Johannes Ranke
}
\examples{
# One parent compound, one metabolite, both single first order.
SFO_SFO <- mkinmod(
parent = list(type = "SFO", to = "m1"),
m1 = list(type = "SFO"))
# The same model using mkinsub
SFO_SFO.2 <- mkinmod(
parent = mkinsub("SFO", "m1"),
m1 = mkinsub("SFO"))
# Now supplying full names
SFO_SFO.2 <- mkinmod(
parent = mkinsub("SFO", "m1", full_name = "Test compound"),
m1 = mkinsub("SFO", full_name = "Metabolite M1"))
}
|
