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ℹ Loading mkin
Loading required package: parallel
ℹ Testing mkin
✔ | F W S OK | Context
⠏ | 0 | AIC
⠏ | 0 | AIC calculation
✔ | 5 | AIC calculation
⠏ | 0 | analytical
⠏ | 0 | Analytical solutions for coupled models
⠋ | 1 | Analytical solutions for coupled models
⠙ | 2 | Analytical solutions for coupled models
⠹ | 3 | Analytical solutions for coupled models
⠸ | 4 | Analytical solutions for coupled models
⠼ | 5 | Analytical solutions for coupled models
✔ | 5 | Analytical solutions for coupled models [3.4s]
⠏ | 0 | aw
⠏ | 0 | Calculation of Akaike weights
✔ | 5 | Calculation of Akaike weights
⠏ | 0 | CAKE_export
⠏ | 0 | Export dataset for reading into CAKE
✔ | 2 | Export dataset for reading into CAKE
⠏ | 0 | confidence
⠏ | 0 | Confidence intervals and p-values
⠼ | 5 | Confidence intervals and p-values
⠋ | 11 | Confidence intervals and p-values
⠙ | 12 | Confidence intervals and p-values
✔ | 12 | Confidence intervals and p-values [1.0s]
⠏ | 0 | error_models
⠏ | 0 | Error model fitting
⠹ | 3 | Error model fitting
⠸ | 4 | Error model fitting
⠼ | 5 | Error model fitting
⠴ | 6 | Error model fitting
⠧ | 8 | Error model fitting
⠏ | 10 | Error model fitting
⠙ | 12 | Error model fitting
⠸ | 14 | Error model fitting
✔ | 14 | Error model fitting [4.9s]
⠏ | 0 | f_time_norm
⠏ | 0 | Time step normalisation
✔ | 5 | Time step normalisation
⠏ | 0 | FOCUS_chi2_error_level
⠏ | 0 | Calculation of FOCUS chi2 error levels
⠙ | 2 | Calculation of FOCUS chi2 error levels
⠸ | 4 | Calculation of FOCUS chi2 error levels
✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
⠏ | 0 | FOCUS_D_UBA_expertise
⠏ | 0 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
⠋ | 1 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
⠧ | 8 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
⠏ | 10 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
⠏ | 0 | from_max_mean
⠏ | 0 | Test fitting the decline of metabolites from their maximum
⠹ | 3 | Test fitting the decline of metabolites from their maximum
⠸ | 4 | Test fitting the decline of metabolites from their maximum
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
⠏ | 0 | logistic
⠏ | 0 | Fitting the logistic model
⠋ | 1 | Fitting the logistic model
✔ | 1 | Fitting the logistic model [0.2s]
⠏ | 0 | mixed
⠏ | 0 | Nonlinear mixed-effects models
⠙ | 2 | Nonlinear mixed-effects models
⠹ | 3 | Nonlinear mixed-effects models
⠸ | 4 | Nonlinear mixed-effects models
⠏ | 10 | Nonlinear mixed-effects models
⠙ | 12 | Nonlinear mixed-effects models
⠧ | 18 | Nonlinear mixed-effects models
⠙ | 22 | Nonlinear mixed-effects models
⠹ | 23 | Nonlinear mixed-effects models
✔ | 1 35 | Nonlinear mixed-effects models [26.6s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
⠏ | 0 | mkinds
⠏ | 0 | Test dataset classes mkinds and mkindsg
✔ | 2 | Test dataset classes mkinds and mkindsg
⠏ | 0 | mkinfit_errors
⠏ | 0 | Special cases of mkinfit calls
⠇ | 9 | Special cases of mkinfit calls
⠏ | 10 | Special cases of mkinfit calls
✔ | 10 | Special cases of mkinfit calls [0.4s]
⠏ | 0 | mkinfit
⠏ | 0 | mkinfit features
⠋ | 1 | mkinfit features
✔ | 1 | mkinfit features [0.3s]
⠏ | 0 | mkinmod
⠏ | 0 | mkinmod model generation and printing
⠧ | 8 | mkinmod model generation and printing
✔ | 8 | mkinmod model generation and printing [0.2s]
⠏ | 0 | mkinpredict_SFO_SFO
⠏ | 0 | Model predictions with mkinpredict
⠋ | 1 | Model predictions with mkinpredict
✔ | 3 | Model predictions with mkinpredict [0.3s]
⠏ | 0 | nafta
⠏ | 0 | Evaluations according to 2015 NAFTA guidance
⠙ | 2 | Evaluations according to 2015 NAFTA guidance
⠇ | 9 | Evaluations according to 2015 NAFTA guidance
⠏ | 10 | Evaluations according to 2015 NAFTA guidance
✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s]
⠏ | 0 | nlme
⠏ | 0 | Nonlinear mixed-effects models with nlme
⠋ | 1 | Nonlinear mixed-effects models with nlme
⠙ | 2 | Nonlinear mixed-effects models with nlme
⠼ | 5 | Nonlinear mixed-effects models with nlme
⠴ | 6 | Nonlinear mixed-effects models with nlme
⠧ | 8 | Nonlinear mixed-effects models with nlme
⠇ | 9 | Nonlinear mixed-effects models with nlme
✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s]
⠏ | 0 | nlmixr
⠏ | 0 | plot
⠏ | 0 | Plotting
⠋ | 1 | Plotting
⠇ | 9 | Plotting
⠹ | 13 | Plotting
⠼ | 15 | Plotting
✔ | 16 | Plotting [1.3s]
⠏ | 0 | residuals
⠏ | 0 | Residuals extracted from mkinfit models
✔ | 4 | Residuals extracted from mkinfit models
⠏ | 0 | schaefer07_complex_case
⠏ | 0 | Complex test case from Schaefer et al. (2007) Piacenza paper
⠋ | 1 | Complex test case from Schaefer et al. (2007) Piacenza paper
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s]
⠏ | 0 | SFORB
⠏ | 0 | Fitting the SFORB model
⠋ | 1 | Fitting the SFORB model
⠼ | 5 | Fitting the SFORB model
✔ | 7 | Fitting the SFORB model [3.9s]
⠏ | 0 | summary_old_objects
⠏ | 0 | Summaries of old mkinfit objects
✔ | 1 | Summaries of old mkinfit objects
⠏ | 0 | summary
⠏ | 0 | Summary
⠸ | 4 | Summary
✔ | 4 | Summary [0.1s]
⠏ | 0 | synthetic_data_for_UBA_2014
⠏ | 0 | Results for synthetic data established in expertise for UBA (Ranke 2014)
⠋ | 1 | Results for synthetic data established in expertise for UBA (Ranke 2014)
⠹ | 3 | Results for synthetic data established in expertise for UBA (Ranke 2014)
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3s]
⠏ | 0 | tests
⠏ | 0 | Hypothesis tests
⠼ | 5 | Hypothesis tests
⠴ | 6 | Hypothesis tests
⠧ | 8 | Hypothesis tests
⠇ | 9 | Hypothesis tests
✔ | 9 | Hypothesis tests [8.5s]
⠏ | 0 | twa
⠏ | 0 | Calculation of maximum time weighted average concentrations (TWAs)
⠋ | 1 | Calculation of maximum time weighted average concentrations (TWAs)
⠙ | 2 | Calculation of maximum time weighted average concentrations (TWAs)
⠹ | 3 | Calculation of maximum time weighted average concentrations (TWAs)
⠸ | 4 | Calculation of maximum time weighted average concentrations (TWAs)
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
Duration: 69.0 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting with saemix takes around 10 minutes when using deSolve (1)
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 206 ]
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