aboutsummaryrefslogblamecommitdiff
path: root/pkg/inst/web/pfm_degradation.html
blob: 68e8859871368d22b99b59d0b524c01c954571b1 (plain) (tree)






















































































































                                                                                                                                                                                                                                                
<!DOCTYPE html>
<html lang="en">
  <head>
    <meta charset="utf-8">
<title>pfm_degradation. pfm 0.3-1</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="author" content="
Johannes Ranke
">

<link href="css/bootstrap.css" rel="stylesheet">
<link href="css/bootstrap-responsive.css" rel="stylesheet">
<link href="css/highlight.css" rel="stylesheet">
<link href="css/staticdocs.css" rel="stylesheet">

<!--[if lt IE 9]>
  <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
<![endif]-->

<script type="text/x-mathjax-config">
  MathJax.Hub.Config({
    tex2jax: {
      inlineMath: [ ['$','$'], ["\\(","\\)"] ],
      processEscapes: true
    }
  });
</script>
<script type="text/javascript"
  src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
</script>
  </head>

  <body>
    <div class="navbar">
  <div class="navbar-inner">
    <div class="container">
      <a class="brand" href="#">pfm 0.3-1</a>
      <div class="nav">
        <ul class="nav">
          <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
        </ul>
      </div>
    </div>
  </div>
</div>

    <div class="container">
      <header>
        
      </header>
      
      <h1>Calculate a time course of relative concentrations based on an mkinmod model</h1>

<div class="row">
  <div class="span8">
    <h2>Usage</h2>
    <pre><div>pfm_degradation(model&nbsp;=&nbsp;"SFO", DT50&nbsp;=&nbsp;1000, parms&nbsp;=&nbsp;c(k_parent_sink = log(2)/DT50), years&nbsp;=&nbsp;1, step_days&nbsp;=&nbsp;1, times&nbsp;=&nbsp;seq(0, years * 365, by = step_days))</div></pre>
    
    <h2>Arguments</h2>
    <dl>
      <dt>model</dt>
      <dd>The degradation model to be used. Either a parent only model like
'SFO' or 'FOMC', or an mkinmod object</dd>
      <dt>DT50</dt>
      <dd>The half-life. This is only used when simple exponential decline
is calculated (SFO model).</dd>
      <dt>parms</dt>
      <dd>The parameters used for the degradation model</dd>
      <dt>years</dt>
      <dd>For how many years should the degradation be predicted?</dd>
      <dt>step_days</dt>
      <dd>What step size in days should the output have?</dd>
      <dt>times</dt>
      <dd>The output times</dd>
    </dl>
    
    <div class="Description">
      <h2>Description</h2>

      <p>Calculate a time course of relative concentrations based on an mkinmod model</p>
  
    </div>
    
    <h2 id="examples">Examples</h2>
    <pre class="examples"><div class='input'>head(pfm_degradation(&quot;SFO&quot;, DT50 = 10))
</div>
<div class='output'>  time    parent
1    0 1.0000000
2    1 0.9330330
3    2 0.8705506
4    3 0.8122524
5    4 0.7578583
6    5 0.7071068
</div></pre>
  </div>
  <div class="span4">
    <!-- <ul>
      <li>pfm_degradation</li>
    </ul>
    <ul>
      
    </ul> -->
      
    
    <h2>Author</h2>
    
Johannes Ranke

    
  </div>
</div>
      
      <footer>
      <p class="pull-right"><a href="#">Back to top</a></p>
<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
      </footer>
    </div>
  </body>
</html>

Contact - Imprint