diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2018-07-10 18:06:29 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2018-07-10 18:06:29 +0200 |
| commit | 22b36c824fe5e1561868a649216fe079c6fbfb85 (patch) | |
| tree | d37a158c3933c9f91fe6c925fc768d7219bc1fca | |
| parent | cb3695dd434b3a3273217fb22c5ffb86065ae96d (diff) | |
Update static docs
44 files changed, 308 insertions, 57 deletions
diff --git a/_pkgdown.yml b/_pkgdown.yml index 4f16d24..7252624 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -15,10 +15,12 @@ reference: - max_twa - pfm_degradation - SFO_actual_twa + - FOMC_actual_twa - title: Predicted environmental concentrations in soil contents: - PEC_soil - soil_scenario_data_EFSA_2015 + - soil_scenario_data_EFSA_2017 - title: Predicted environmental concentrations in groundwater contents: - FOCUS_GW_scenarios_2012 diff --git a/docs/authors.html b/docs/authors.html index 27e5e7c..e128b4d 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -58,7 +58,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/index.html b/docs/index.html index b7f32cc..70a1fed 100644 --- a/docs/index.html +++ b/docs/index.html @@ -31,7 +31,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -84,7 +84,7 @@ this program. If not, see <span class="op"><</span>http<span class="op">:</sp <div id="installation" class="section level2"> <h2 class="hasAnchor"> <a href="#installation" class="anchor"></a>Installation</h2> -<p>The easiest way to install the package is probably to use <a href="http://cran.r-project.org/package=drat">drat</a>:</p> +<p>The easiest way to install the package is probably to use <a href="https://cran.r-project.org/package=drat">drat</a>:</p> <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">install.packages</span>(<span class="st">"drat"</span>) drat<span class="op">::</span><span class="kw"><a href="http://www.rdocumentation.org/packages/drat/topics/addRepo">addRepo</a></span>(<span class="st">"jranke"</span>) <span class="kw">install.packages</span>(<span class="st">"pfm"</span>)</code></pre></div> diff --git a/docs/reference/FOCUS_GW_scenarios_2012.html b/docs/reference/FOCUS_GW_scenarios_2012.html index 1a9d513..af6d243 100644 --- a/docs/reference/FOCUS_GW_scenarios_2012.html +++ b/docs/reference/FOCUS_GW_scenarios_2012.html @@ -62,7 +62,7 @@ soil definitions are from page 46ff. from FOCUS (2012)." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/FOCUS_PELMO_crop_sze_names.html b/docs/reference/FOCUS_PELMO_crop_sze_names.html index 89348f6..4eed679 100644 --- a/docs/reference/FOCUS_PELMO_crop_sze_names.html +++ b/docs/reference/FOCUS_PELMO_crop_sze_names.html @@ -64,7 +64,7 @@ files used for Beans (field) and Beans (vegetable) are the same." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/FOCUS_PELMO_crops.html b/docs/reference/FOCUS_PELMO_crops.html index 16653d9..e4928cd 100644 --- a/docs/reference/FOCUS_PELMO_crops.html +++ b/docs/reference/FOCUS_PELMO_crops.html @@ -65,7 +65,7 @@ in the three letter code, i.e. 'Peas (animals)' has the code ape." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/FOCUS_PELMO_location_codes.html b/docs/reference/FOCUS_PELMO_location_codes.html index 817d888..8177747 100644 --- a/docs/reference/FOCUS_PELMO_location_codes.html +++ b/docs/reference/FOCUS_PELMO_location_codes.html @@ -62,7 +62,7 @@ indexed by three letter acronyms." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/FOCUS_Step_12_scenarios.html b/docs/reference/FOCUS_Step_12_scenarios.html index 9ceb79d..b9f2e0d 100644 --- a/docs/reference/FOCUS_Step_12_scenarios.html +++ b/docs/reference/FOCUS_Step_12_scenarios.html @@ -62,7 +62,7 @@ The text file is not included in the package as its licence is not clear." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/FOMC_actual_twa.html b/docs/reference/FOMC_actual_twa.html index 7a62183..685edc3 100644 --- a/docs/reference/FOMC_actual_twa.html +++ b/docs/reference/FOMC_actual_twa.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/GUS.html b/docs/reference/GUS.html index 87714e0..65763bc 100644 --- a/docs/reference/GUS.html +++ b/docs/reference/GUS.html @@ -63,7 +63,7 @@ $$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PEC_soil.html b/docs/reference/PEC_soil.html index 5073067..8903470 100644 --- a/docs/reference/PEC_soil.html +++ b/docs/reference/PEC_soil.html @@ -33,9 +33,10 @@ <meta property="og:title" content="Calculate predicted environmental concentrations in soil — PEC_soil" /> <meta property="og:description" content="This is a basic calculation of a contaminant concentration in bulk soil -based on complete, instantaneous mixing. If an interval is given, an +based on complete, instantaneous mixing. If an interval is given, an attempt is made at calculating a long term maximum concentration using -the concepts layed out for example in the PPR panel opinion (EFSA 2012)." /> +the concepts layed out in the PPR panel opinion (EFSA PPR panel 2012 +and in the EFSA guidance on PEC soil calculations (EFSA, 2015, 2017)." /> <meta name="twitter:card" content="summary" /> @@ -64,7 +65,7 @@ the concepts layed out for example in the PPR panel opinion (EFSA 2012)." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -108,17 +109,20 @@ the concepts layed out for example in the PPR panel opinion (EFSA 2012)." /> <div class="ref-description"> <p>This is a basic calculation of a contaminant concentration in bulk soil -based on complete, instantaneous mixing. If an interval is given, an +based on complete, instantaneous mixing. If an interval is given, an attempt is made at calculating a long term maximum concentration using -the concepts layed out for example in the PPR panel opinion (EFSA 2012).</p> +the concepts layed out in the PPR panel opinion (EFSA PPR panel 2012 +and in the EFSA guidance on PEC soil calculations (EFSA, 2015, 2017).</p> </div> <pre class="usage"><span class='fu'>PEC_soil</span>(<span class='no'>rate</span>, <span class='kw'>rate_units</span> <span class='kw'>=</span> <span class='st'>"g/ha"</span>, <span class='kw'>interception</span> <span class='kw'>=</span> <span class='fl'>0</span>, <span class='kw'>mixing_depth</span> <span class='kw'>=</span> <span class='fl'>5</span>, <span class='kw'>PEC_units</span> <span class='kw'>=</span> <span class='st'>"mg/kg"</span>, <span class='kw'>PEC_pw_units</span> <span class='kw'>=</span> <span class='st'>"mg/L"</span>, <span class='kw'>interval</span> <span class='kw'>=</span> <span class='fl'>NA</span>, - <span class='kw'>n_periods</span> <span class='kw'>=</span> <span class='fl'>Inf</span>, <span class='kw'>tillage_depth</span> <span class='kw'>=</span> <span class='fl'>20</span>, <span class='kw'>chent</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>NA</span>, + <span class='kw'>n_periods</span> <span class='kw'>=</span> <span class='fl'>Inf</span>, <span class='kw'>tillage_depth</span> <span class='kw'>=</span> <span class='fl'>20</span>, <span class='kw'>leaching_depth</span> <span class='kw'>=</span> <span class='no'>tillage_depth</span>, + <span class='kw'>crop</span> <span class='kw'>=</span> <span class='st'>"annual"</span>, <span class='kw'>cultivation</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>chent</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>Koc</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>Kom</span> <span class='kw'>=</span> <span class='no'>Koc</span>/<span class='fl'>1.724</span>, <span class='kw'>t_avg</span> <span class='kw'>=</span> <span class='fl'>0</span>, <span class='kw'>scenarios</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"default"</span>, - <span class='st'>"EFSA_2015"</span>), <span class='kw'>porewater</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</pre> + <span class='st'>"EFSA_2017"</span>, <span class='st'>"EFSA_2015"</span>), <span class='kw'>leaching</span> <span class='kw'>=</span> <span class='no'>scenarios</span> <span class='kw'>==</span> <span class='st'>"EFSA_2017"</span>, + <span class='kw'>porewater</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</pre> <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2> <table class="ref-arguments"> @@ -161,8 +165,27 @@ degradation rate units are in days</p></td> <td><p>Periodic (see interval) deeper mixing in cm</p></td> </tr> <tr> + <th>leaching_depth</th> + <td><p>EFSA (2017) uses the mixing depth (ecotoxicological +evaluation depth) to calculate leaching for annual crops where tillage +takes place. By default, losses from the layer down to the tillage +depth are taken into account in this implementation.</p></td> + </tr> + <tr> + <th>crop</th> + <td><p>Ignored for scenarios other than EFSA_2017. Only annual crops +are supported when these scenarios are used. Only crops with a single cropping +cycle per year are currently supported.</p></td> + </tr> + <tr> + <th>cultivation</th> + <td><p>Does mechanical cultivation in the sense of EFSA (2017) +take place, i.e. twice a year to a depth of 5 cm? Ignored for scenarios +other than EFSA_2017</p></td> + </tr> + <tr> <th>chent</th> - <td><p>An optional chent object holding substance specific information. Can + <td><p>An optional chent object holding substance specific information. Can also be a name for the substance as a character string</p></td> </tr> <tr> @@ -195,6 +218,11 @@ and corrected using an Arrhenius activation energy of 65.4 kJ/mol. Also model and scenario adjustment factors from the EFSA guidance are used.</p></td> </tr> <tr> + <th>leaching</th> + <td><p>Should leaching be taken into account? The default is FALSE, +except when the EFSA_2017 scenarios are used.</p></td> + </tr> + <tr> <th>porewater</th> <td><p>Should equilibrium porewater concentrations be estimated based on Kom and the organic carbon fraction of the soil instead of total @@ -212,14 +240,24 @@ p. 13).</p></td> <p>This assumes that the complete load to soil during the time specified by 'interval' (typically 365 days) is dosed at once. As in the PPR panel -opinion cited below (PPR panel 2012), only temperature correction using the +opinion cited below (EFSA PPR panel 2012), only temperature correction using the Arrhenius equation is performed.</p> <p>Total soil and porewater PEC values for the scenarios as defined in the EFSA -guidance (2015, p. 13) can easily be calculated.</p> +guidance (2017, p. 14/15) can easily be calculated.</p> <h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2> - <p>If temperature information is available in the selected scenarios, as + <p>While time weighted average (TWA) concentrations given in the examples +from the EFSA guidance from 2015 (p. 80) are be reproduced, this is not +true for the TWA concentrations given for the same example in the EFSA guidance +from 2017 (p. 92).</p> +<p>According to the EFSA guidance (EFSA, 2017, p. 43), leaching should be + taken into account for the EFSA 2017 scenarios, using the evaluation depth + (here mixing depth) as the depth of the layer from which leaching takes + place. However, as the amount leaching below the evaluation depth + (often 5 cm) will partly be mixed back during tillage, the default in this function + is to use the tillage depth for the calculation of the leaching rate.</p> +<p>If temperature information is available in the selected scenarios, as e.g. in the EFSA scenarios, the DT50 for groundwater modelling (destination 'PECgw') is taken from the chent object, otherwise the DT50 with destination 'PECsoil'.</p> @@ -231,6 +269,11 @@ guidance (2015, p. 13) can easily be calculated.</p> selection and scenario parameterisation for predicting environmental concentrations of plant protection products in soil. <em>EFSA Journal</em> <b>10</b>(2) 2562, doi:10.2903/j.efsa.2012.2562</p> +<p>EFSA (European Food Safety Authority) 2017) EFSA guidance document for + predicting environmental concentrations of active substances of plant + protection products and transformation products of these active substances + in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982 + doi:10.2903/j.efsa.2017.4982</p> <p>EFSA (European Food Safety Authority) (2015) EFSA guidance document for predicting environmental concentrations of active substances of plant protection products and transformation products of these active substances @@ -242,6 +285,18 @@ guidance (2015, p. 13) can easily be calculated.</p> <pre class="examples"><div class='input'><span class='fu'>PEC_soil</span>(<span class='fl'>100</span>, <span class='kw'>interception</span> <span class='kw'>=</span> <span class='fl'>0.25</span>)</div><div class='output co'>#> scenario #> t_avg default #> 0 0.1</div><div class='input'> +<span class='co'># This is example 1 starting at p. 92 of the EFSA guidance (2017)</span> +<span class='co'># Note that TWA concentrations differ from the ones given in the guidance</span> +<span class='co'># for an unknown reason (the values from EFSA (2015) can be reproduced).</span> +<span class='fu'>PEC_soil</span>(<span class='fl'>1000</span>, <span class='kw'>interval</span> <span class='kw'>=</span> <span class='fl'>365</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>250</span>, <span class='kw'>t_avg</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0</span>, <span class='fl'>21</span>), + <span class='kw'>Kom</span> <span class='kw'>=</span> <span class='fl'>1000</span>, <span class='kw'>scenarios</span> <span class='kw'>=</span> <span class='st'>"EFSA_2017"</span>)</div><div class='output co'>#> scenario +#> t_avg CTN CTC CTS +#> 0 19.76834 13.8619 10.53795 +#> 21 19.59345 13.7169 10.39882</div><div class='input'><span class='fu'>PEC_soil</span>(<span class='fl'>1000</span>, <span class='kw'>interval</span> <span class='kw'>=</span> <span class='fl'>365</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>250</span>, <span class='kw'>t_av</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0</span>, <span class='fl'>21</span>), + <span class='kw'>Kom</span> <span class='kw'>=</span> <span class='fl'>1000</span>, <span class='kw'>scenarios</span> <span class='kw'>=</span> <span class='st'>"EFSA_2017"</span>, <span class='kw'>porewater</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> scenario +#> t_avg CLN CLC CLS +#> 0 0.5541984 0.6779249 0.9816693 +#> 21 0.5484576 0.6693125 0.9609119</div><div class='input'> <span class='co'># This is example 1 starting at p. 79 of the EFSA guidance (2015)</span> <span class='fu'>PEC_soil</span>(<span class='fl'>1000</span>, <span class='kw'>interval</span> <span class='kw'>=</span> <span class='fl'>365</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>250</span>, <span class='kw'>t_avg</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0</span>, <span class='fl'>21</span>), <span class='kw'>scenarios</span> <span class='kw'>=</span> <span class='st'>"EFSA_2015"</span>)</div><div class='output co'>#> scenario diff --git a/docs/reference/PEC_sw_drainage_UK.html b/docs/reference/PEC_sw_drainage_UK.html index 91eeccb..e183ae2 100644 --- a/docs/reference/PEC_sw_drainage_UK.html +++ b/docs/reference/PEC_sw_drainage_UK.html @@ -62,7 +62,7 @@ published on the CRC website" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PEC_sw_drift.html b/docs/reference/PEC_sw_drift.html index 02b641f..b5608db 100644 --- a/docs/reference/PEC_sw_drift.html +++ b/docs/reference/PEC_sw_drift.html @@ -63,7 +63,7 @@ with input via spray drift." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PEC_sw_exposit_runoff.html b/docs/reference/PEC_sw_exposit_runoff.html index 2942ebb..9fab616 100644 --- a/docs/reference/PEC_sw_exposit_runoff.html +++ b/docs/reference/PEC_sw_exposit_runoff.html @@ -62,7 +62,7 @@ in the worksheet "Konzept Runoff". Calculation of sediment PEC values </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PEC_sw_focus.html b/docs/reference/PEC_sw_focus.html index 535e82e..88f5b43 100644 --- a/docs/reference/PEC_sw_focus.html +++ b/docs/reference/PEC_sw_focus.html @@ -67,7 +67,7 @@ to be used with the FOCUS calculator." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PEC_sw_sed.html b/docs/reference/PEC_sw_sed.html index 532031b..01ccf29 100644 --- a/docs/reference/PEC_sw_sed.html +++ b/docs/reference/PEC_sw_sed.html @@ -64,7 +64,7 @@ PEC calculator" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PELMO_path.html b/docs/reference/PELMO_path.html index a678cb6..b390917 100644 --- a/docs/reference/PELMO_path.html +++ b/docs/reference/PELMO_path.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PELMO_runs.html b/docs/reference/PELMO_runs.html index 5d53104..12a4244 100644 --- a/docs/reference/PELMO_runs.html +++ b/docs/reference/PELMO_runs.html @@ -67,7 +67,7 @@ and run using wine." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -229,7 +229,7 @@ the period.plm file generated by the FOCUS PELMO GUI.</p> #> #> </div><div class='input'><span class='co'># We get exactly the same PECgw values (on Linux, calling PELMO using Wine).</span> <span class='fu'>print</span>(<span class='no'>time_1</span>)</div><div class='output co'>#> User System verstrichen -#> 0.384 0.095 30.954 </div><div class='input'><span class='kw'>if</span>(!<span class='fu'>inherits</span>(<span class='fu'>try</span>(<span class='no'>cpuinfo</span> <span class='kw'><-</span> <span class='fu'>readLines</span>(<span class='st'>"/proc/cpuinfo"</span>)), <span class='st'>"try-error"</span>)) { +#> 0.383 0.129 30.547 </div><div class='input'><span class='kw'>if</span>(!<span class='fu'>inherits</span>(<span class='fu'>try</span>(<span class='no'>cpuinfo</span> <span class='kw'><-</span> <span class='fu'>readLines</span>(<span class='st'>"/proc/cpuinfo"</span>)), <span class='st'>"try-error"</span>)) { <span class='fu'>cat</span>(<span class='fu'>gsub</span>(<span class='st'>"model name\t: "</span>, <span class='st'>"CPU model: "</span>, <span class='no'>cpuinfo</span>[<span class='fu'>grep</span>(<span class='st'>"model name"</span>, <span class='no'>cpuinfo</span>)[<span class='fl'>1</span>]])) }</div><div class='output co'>#> CPU model: AMD Ryzen 7 1700 Eight-Core Processor</div><div class='input'> <span class='co'># Demonstrate some results with metabolites.</span> diff --git a/docs/reference/SFO_actual_twa.html b/docs/reference/SFO_actual_twa.html index e5b1e8a..b7b65f5 100644 --- a/docs/reference/SFO_actual_twa.html +++ b/docs/reference/SFO_actual_twa.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/SSLRC_mobility_classification.html b/docs/reference/SSLRC_mobility_classification.html index 49b80e7..06be24e 100644 --- a/docs/reference/SSLRC_mobility_classification.html +++ b/docs/reference/SSLRC_mobility_classification.html @@ -62,7 +62,7 @@ checked against the spreadsheet published on the CRC website" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/TOXSWA_cwa.html b/docs/reference/TOXSWA_cwa.html index 932e6ef..a1b6bfe 100644 --- a/docs/reference/TOXSWA_cwa.html +++ b/docs/reference/TOXSWA_cwa.html @@ -62,7 +62,7 @@ Usually, an instance of this class will be generated by read.TOXSWA_cwa." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/chent_focus_sw.html b/docs/reference/chent_focus_sw.html index 1683067..39b3c9e 100644 --- a/docs/reference/chent_focus_sw.html +++ b/docs/reference/chent_focus_sw.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/create_run_list.html b/docs/reference/create_run_list.html index 255aa1d..c52719d 100644 --- a/docs/reference/create_run_list.html +++ b/docs/reference/create_run_list.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/drift_data_JKI.html b/docs/reference/drift_data_JKI.html index ada93e7..c3f1f4d 100644 --- a/docs/reference/drift_data_JKI.html +++ b/docs/reference/drift_data_JKI.html @@ -64,7 +64,7 @@ published by the German Julius-Kühn Institute (JKI)." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/endpoint.html b/docs/reference/endpoint.html index a078bd8..819d8bc 100644 --- a/docs/reference/endpoint.html +++ b/docs/reference/endpoint.html @@ -64,7 +64,7 @@ this function." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/focus_80th.html b/docs/reference/focus_80th.html index 375e15a..0604fa7 100644 --- a/docs/reference/focus_80th.html +++ b/docs/reference/focus_80th.html @@ -64,7 +64,7 @@ values obtained by PELMO." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/geomean.html b/docs/reference/geomean.html index 5673322..dfcd15e 100644 --- a/docs/reference/geomean.html +++ b/docs/reference/geomean.html @@ -64,7 +64,7 @@ returns 0 if at least one element of the vector is 0." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/get_flux.html b/docs/reference/get_flux.html index 025b4ad..518b09c 100644 --- a/docs/reference/get_flux.html +++ b/docs/reference/get_flux.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/get_interval.html b/docs/reference/get_interval.html index 0cd69f3..4b73ca2 100644 --- a/docs/reference/get_interval.html +++ b/docs/reference/get_interval.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/index.html b/docs/reference/index.html index 162298b..12abbd4 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -58,7 +58,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -160,6 +160,12 @@ <p><code><a href="SFO_actual_twa.html">SFO_actual_twa()</a></code> </p> </td> <td><p>Actual and maximum moving window time average concentrations for SFO kinetics</p></td> + </tr><tr> + + <td> + <p><code><a href="FOMC_actual_twa.html">FOMC_actual_twa()</a></code> </p> + </td> + <td><p>Actual and maximum moving window time average concentrations for FOMC kinetics</p></td> </tr> </tbody><tbody> <tr> @@ -180,6 +186,12 @@ <p><code><a href="soil_scenario_data_EFSA_2015.html">soil_scenario_data_EFSA_2015</a></code> </p> </td> <td><p>Properties of the predefined scenarios from the EFSA guidance from 2015</p></td> + </tr><tr> + + <td> + <p><code><a href="soil_scenario_data_EFSA_2017.html">soil_scenario_data_EFSA_2017</a></code> </p> + </td> + <td><p>Properties of the predefined scenarios from the EFSA guidance from 2017</p></td> </tr> </tbody><tbody> <tr> diff --git a/docs/reference/max_twa.html b/docs/reference/max_twa.html index 6e5ee67..c603fb4 100644 --- a/docs/reference/max_twa.html +++ b/docs/reference/max_twa.html @@ -65,7 +65,7 @@ max_twa." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/one_box.html b/docs/reference/one_box.html index 9cd4d61..f3a6324 100644 --- a/docs/reference/one_box.html +++ b/docs/reference/one_box.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/perc_runoff_exposit.html b/docs/reference/perc_runoff_exposit.html index e243efb..2c7dd2a 100644 --- a/docs/reference/perc_runoff_exposit.html +++ b/docs/reference/perc_runoff_exposit.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -113,6 +113,7 @@ <p>A data frame with percentage values for the dissolved fraction and the fraction bound to eroding particles, with Koc classes used as row names</p><dl class='dl-horizontal'> + <dt>Koc_lower_bound</dt><dd><p>The lower bound of the Koc class</p></dd> <dt>dissolved</dt><dd><p>The percentage of the applied substance transferred to an adjacent water body in the dissolved phase</p></dd> <dt>bound</dt><dd><p>The percentage of the applied substance transferred to an diff --git a/docs/reference/perc_runoff_reduction_exposit.html b/docs/reference/perc_runoff_reduction_exposit.html index 4e10a64..9a8f10a 100644 --- a/docs/reference/perc_runoff_reduction_exposit.html +++ b/docs/reference/perc_runoff_reduction_exposit.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/pesticide.txt b/docs/reference/pesticide.txt index d4fd84e..1f9181a 100644 --- a/docs/reference/pesticide.txt +++ b/docs/reference/pesticide.txt @@ -37,3 +37,7 @@ Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Du M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00 16.00 17.00 18.00 19.00 20.00 21.00 22.00 23.00 24.00 25.00 26.00 27.00 28.00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00 M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 +Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00 16.00 17.00 18.00 19.00 20.00 21.00 22.00 23.00 24.00 25.00 26.00 27.00 28.00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00 +M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 +Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00 16.00 17.00 18.00 19.00 20.00 21.00 22.00 23.00 24.00 25.00 26.00 27.00 28.00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00 +M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 diff --git a/docs/reference/pfm_degradation.html b/docs/reference/pfm_degradation.html index e547ed1..16df913 100644 --- a/docs/reference/pfm_degradation.html +++ b/docs/reference/pfm_degradation.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/plot.TOXSWA_cwa.html b/docs/reference/plot.TOXSWA_cwa.html index 8612bac..65703e8 100644 --- a/docs/reference/plot.TOXSWA_cwa.html +++ b/docs/reference/plot.TOXSWA_cwa.html @@ -62,7 +62,7 @@ segment of a TOXSWA surface water body." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/plot.one_box.html b/docs/reference/plot.one_box.html index a8f62d4..473243a 100644 --- a/docs/reference/plot.one_box.html +++ b/docs/reference/plot.one_box.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/read.TOXSWA_cwa.html b/docs/reference/read.TOXSWA_cwa.html index aa18ec4..5f6aba2 100644 --- a/docs/reference/read.TOXSWA_cwa.html +++ b/docs/reference/read.TOXSWA_cwa.html @@ -66,7 +66,7 @@ renamed to ConLiqWatLay in the out file." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/sawtooth.html b/docs/reference/sawtooth.html index 175e045..87dcab2 100644 --- a/docs/reference/sawtooth.html +++ b/docs/reference/sawtooth.html @@ -63,7 +63,7 @@ times, with an interval i." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/soil_scenario_data_EFSA_2015.html b/docs/reference/soil_scenario_data_EFSA_2015.html index 64c9c28..23fe106 100644 --- a/docs/reference/soil_scenario_data_EFSA_2015.html +++ b/docs/reference/soil_scenario_data_EFSA_2015.html @@ -63,7 +63,7 @@ scenario and model adjustment factors from p. 15 and p. 17 are included." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -122,10 +122,10 @@ scenario and model adjustment factors from p. 15 and p. 17 are included.</p> <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2> <p>EFSA (European Food Safety Authority) (2015) -EFSA guidance document for predicting environmental concentrations -of active substances of plant protection products and transformation products of these -active substances in soil. <em>EFSA Journal</em> <b>13</b>(4) 4093 -doi:10.2903/j.efsa.2015.4093</p> + EFSA guidance document for predicting environmental concentrations + of active substances of plant protection products and transformation products of these + active substances in soil. <em>EFSA Journal</em> <b>13</b>(4) 4093 + doi:10.2903/j.efsa.2015.4093</p> <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> diff --git a/docs/reference/soil_scenario_data_EFSA_2017.html b/docs/reference/soil_scenario_data_EFSA_2017.html new file mode 100644 index 0000000..be49263 --- /dev/null +++ b/docs/reference/soil_scenario_data_EFSA_2017.html @@ 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property="og:description" content="Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the +concentration in soil as given in the EFSA guidance (2017, p. 14/15). Also, the +scenario and model adjustment factors from p. 16 and p. 18 are included." /> +<meta name="twitter:card" content="summary" /> + + + +<!-- mathjax --> +<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> + +<!--[if lt IE 9]> +<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> +<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> +<![endif]--> + + + </head> + + <body> + <div class="container template-reference-topic"> + <header> + <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <div class="container"> + <div class="navbar-header"> + <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar"> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + </button> + <span class="navbar-brand"> + <a class="navbar-link" href="../index.html">pfm</a> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> + </span> + </div> + + <div id="navbar" class="navbar-collapse collapse"> + <ul class="nav navbar-nav"> + <li> + <a href="../index.html"> + <span class="fa fa-home fa-lg"></span> + + </a> +</li> +<li> + <a href="../reference/index.html">Reference</a> +</li> + </ul> + + <ul class="nav navbar-nav navbar-right"> + <li> + <a href="https://github.com/jranke/pfm"> + <span class="fa fa-github fa-lg"></span> + + </a> +</li> + </ul> + + </div><!--/.nav-collapse --> + </div><!--/.container --> +</div><!--/.navbar --> + + + </header> + +<div class="row"> + <div class="col-md-9 contents"> + <div class="page-header"> + <h1>Properties of the predefined scenarios from the EFSA guidance from 2017</h1> + <small class="dont-index">Source: <a href='https://github.com/jranke/pfm/blob/master/R/soil_scenario_data_EFSA_2017.R'><code>R/soil_scenario_data_EFSA_2017.R</code></a></small> + <div class="hidden name"><code>soil_scenario_data_EFSA_2017.Rd</code></div> + </div> + + <div class="ref-description"> + + <p>Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the +concentration in soil as given in the EFSA guidance (2017, p. 14/15). Also, the +scenario and model adjustment factors from p. 16 and p. 18 are included.</p> + + </div> + + + <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2> + + <p>A data frame with one row for each scenario. Row names are the scenario codes, + e.g. CTN for the Northern scenario for the total concentration in soil. Columns are + mostly self-explanatory. <code>rho</code> is the dry bulk density of the top soil.</p> + + <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2> + + <p>EFSA (European Food Safety Authority) (2017) + EFSA guidance document for predicting environmental concentrations + of active substances of plant protection products and transformation products of these + active substances in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982 + doi:10.2903/j.efsa.2017.4982</p> + + + <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> + <pre class="examples"><div class='input'><span class='no'>soil_scenario_data_EFSA_2017</span></div><div class='output co'>#> Zone Country T_arit T_arr Texture f_om theta_fc rho f_sce f_mod +#> CTN North Estonia 5.7 7.6 Coarse 0.220 0.244 0.707 1.4 3 +#> CTC Central Poland 7.4 9.3 Coarse 0.122 0.244 0.934 1.4 3 +#> CTS South France 10.2 11.7 Medium 0.070 0.349 1.117 1.4 3 +#> CLN North Denmark 8.0 9.2 Medium 0.025 0.349 1.371 1.6 4 +#> CLC Central Austria 9.3 11.3 Medium 0.018 0.349 1.432 1.6 4 +#> CLS South Spain 15.4 16.7 Medium 0.010 0.349 1.521 1.6 4 +#> FOCUS_zone prec +#> CTN Hamburg 639 +#> CTC Hamburg 617 +#> CTS Hamburg 667 +#> CLN Hamburg 602 +#> CLC Châteaudun 589 +#> CLS Sevilla 526</div></pre> + </div> + <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> + <h2>Contents</h2> + <ul class="nav nav-pills nav-stacked"> + + <li><a href="#format">Format</a></li> + + <li><a href="#source">Source</a></li> + + <li><a href="#examples">Examples</a></li> + </ul> + + </div> +</div> + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p> +</div> + + </footer> + </div> + + + + </body> +</html> + diff --git a/docs/reference/sum_periods.html b/docs/reference/sum_periods.html index ec0c34b..109d9e7 100644 --- a/docs/reference/sum_periods.html +++ b/docs/reference/sum_periods.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/twa.html b/docs/reference/twa.html index da44f92..f74399c 100644 --- a/docs/reference/twa.html +++ b/docs/reference/twa.html @@ -63,7 +63,7 @@ is after one window has passed." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.6</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> |