Add more drift data, especially 3 m field crop data

To support Agroscope in doing lots of PEC calculations for Switzerland
author: Johannes Ranke <jranke@uni-bremen.de> 2019-04-25 11:50:35 +0200
committer: Johannes Ranke <jranke@uni-bremen.de> 2019-04-25 11:50:35 +0200
commit: 451b332c8888bac8279340b086abb3b714ac3ae1 (patch)
tree: 9704ae10e8670ff7ec750e612d223739ebafa316
parent: 3bb842b93107dd6207610de1fe5b44be66779e4d (diff)
46 files changed, 363 insertions, 170 deletions
diff --git a/ChangeLog b/ChangeLog
index eeb3fe4..16aa30a 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,23 @@
+commit 3bb842b93107dd6207610de1fe5b44be66779e4d
+Author: Johannes Ranke <jranke@uni-bremen.de>
+Date:   2019-04-25 10:25:56 +0200
+
+    Remove leftover docs from earlier version
+    
+    Docs now live in docs/
+
+commit 77f63efa62b6530fbe2accdacc866e34626fe4e3
+Author: Johannes Ranke <jranke@uni-bremen.de>
+Date:   2019-02-21 16:01:38 +0100
+
+    Update docs
+
+commit 5086e2b87eaec90a02b4744d1321c6949d0b8982
+Author: Johannes Ranke <jranke@uni-bremen.de>
+Date:   2019-02-21 15:59:22 +0100
+
+    Use codecov
+
 commit e21ec96873bf60072414369bc96e4c076a450235
 Author: Johannes Ranke <jranke@uni-bremen.de>
 Date:   2019-02-19 17:13:55 +0100
diff --git a/DESCRIPTION b/DESCRIPTION
index 35e9da9..34e1fc4 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: pfm
 Type: Package
 Title: Utilities for Pesticide Fate Modelling
-Version: 0.5.3
-Date: 2019-02-21
+Version: 0.5.4
+Date: 2019-04-25
 Authors@R: person("Johannes Ranke", email = "jranke@uni-bremen.de",
                   role = c("aut", "cre", "cph"),
                   comment = c(ORCID = "0000-0003-4371-6538"))
diff --git a/build.log b/build.log
index 60f9962..b721d36 100644
--- a/build.log
+++ b/build.log
@@ -7,5 +7,5 @@ Removed empty directory ‘pfm/inst/testdata/SwashProjects/Project_1/MACRO’
 Removed empty directory ‘pfm/inst/testdata/SwashProjects/Project_1’
 Removed empty directory ‘pfm/inst/testdata/SwashProjects’
 * looking to see if a ‘data/datalist’ file should be added
-* building ‘pfm_0.5.3.tar.gz’
+* building ‘pfm_0.5.4.tar.gz’
 
diff --git a/data/drift_data_JKI.RData b/data/drift_data_JKI.RData
index 0a2f05e..7a21b24 100644
--- a/data/drift_data_JKI.RData
+++ b/data/drift_data_JKI.RData
diff --git a/docs/authors.html b/docs/authors.html
index 977f810..066d25f 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -60,7 +60,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -117,7 +117,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/index.html b/docs/index.html
index 4a41dde..0220e80 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -32,7 +32,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -75,12 +75,12 @@
 <h2 class="hasAnchor">
 <a href="#installation" class="anchor"></a>Installation</h2>
 <p>The easiest way to install the package is probably to use <a href="https://cran.r-project.org/package=drat">drat</a>:</p>
-<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/install.packages">install.packages</a></span>(<span class="st">"drat"</span>)</a>
-<a class="sourceLine" id="cb1-2" data-line-number="2">drat<span class="op">::</span><span class="kw"><a href="https://www.rdocumentation.org/packages/drat/topics/addRepo">addRepo</a></span>(<span class="st">"jranke"</span>)</a>
-<a class="sourceLine" id="cb1-3" data-line-number="3"><span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/install.packages">install.packages</a></span>(<span class="st">"pfm"</span>)</a></code></pre></div>
+<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/install.packages">install.packages</a></span>(<span class="st">"drat"</span>)</a>
+<a class="sourceLine" id="cb1-2" title="2">drat<span class="op">::</span><span class="kw"><a href="https://www.rdocumentation.org/packages/drat/topics/addRepo">addRepo</a></span>(<span class="st">"jranke"</span>)</a>
+<a class="sourceLine" id="cb1-3" title="3"><span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/install.packages">install.packages</a></span>(<span class="st">"pfm"</span>)</a></code></pre></div>
 <p>Alternatively you can install the package using the <code>devtools</code> package. Using <code>quick = TRUE</code> skips docs, multiple-architecture builds, demos, and vignettes.</p>
-<div class="sourceCode" id="cb2"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb2-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(devtools)</a>
-<a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/devtools/topics/reexports">install_github</a></span>(<span class="st">"jranke/pfm"</span>, <span class="dt">quick =</span> <span class="ot">TRUE</span>)</a></code></pre></div>
+<div class="sourceCode" id="cb2"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb2-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(devtools)</a>
+<a class="sourceLine" id="cb2-2" title="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/devtools/topics/reexports">install_github</a></span>(<span class="st">"jranke/pfm"</span>, <span class="dt">quick =</span> <span class="ot">TRUE</span>)</a></code></pre></div>
 </div>
 <div id="use" class="section level2">
 <h2 class="hasAnchor">
@@ -131,7 +131,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
 </div>
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index 1dc6ec1..354fdca 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -1,5 +1,5 @@
 pandoc: 2.2.1
-pkgdown: 1.3.0
+pkgdown: 1.3.0.9000
 pkgdown_sha: ~
 articles: []
 
diff --git a/docs/reference/FOCUS_GW_scenarios_2012.html b/docs/reference/FOCUS_GW_scenarios_2012.html
index d60f44f..722971a 100644
--- a/docs/reference/FOCUS_GW_scenarios_2012.html
+++ b/docs/reference/FOCUS_GW_scenarios_2012.html
@@ -64,7 +64,7 @@ soil definitions are from page 46ff. from FOCUS (2012)." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -207,7 +207,7 @@ soil definitions are from page 46ff. from FOCUS (2012).</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/FOCUS_Step_12_scenarios.html b/docs/reference/FOCUS_Step_12_scenarios.html
index 2020899..53e0570 100644
--- a/docs/reference/FOCUS_Step_12_scenarios.html
+++ b/docs/reference/FOCUS_Step_12_scenarios.html
@@ -64,7 +64,7 @@ The text file is not included in the package as its licence is not clear." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -310,7 +310,7 @@ The text file is not included in the package as its licence is not clear.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/FOMC_actual_twa.html b/docs/reference/FOMC_actual_twa.html
index 9963761..6826618 100644
--- a/docs/reference/FOMC_actual_twa.html
+++ b/docs/reference/FOMC_actual_twa.html
@@ -63,7 +63,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -172,7 +172,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/GUS.html b/docs/reference/GUS.html
index 18f59be..1a5da20 100644
--- a/docs/reference/GUS.html
+++ b/docs/reference/GUS.html
@@ -65,7 +65,7 @@ $$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$" />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -234,7 +234,7 @@ toxicology and chemistry</em> <b>8</b>(4) 339–57.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/PEC_FOMC_accu_rel.html b/docs/reference/PEC_FOMC_accu_rel.html
index a81683d..2c3be54 100644
--- a/docs/reference/PEC_FOMC_accu_rel.html
+++ b/docs/reference/PEC_FOMC_accu_rel.html
@@ -63,7 +63,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -152,7 +152,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/PEC_soil.html b/docs/reference/PEC_soil.html
index db09110..bef0f05 100644
--- a/docs/reference/PEC_soil.html
+++ b/docs/reference/PEC_soil.html
@@ -67,7 +67,7 @@ and in the EFSA guidance on PEC soil calculations (EFSA, 2015, 2017)." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -358,7 +358,7 @@ from 2017 (p. 92).</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/PEC_soil_mets.html b/docs/reference/PEC_soil_mets.html
index e60cc70..5ca7de4 100644
--- a/docs/reference/PEC_soil_mets.html
+++ b/docs/reference/PEC_soil_mets.html
@@ -63,7 +63,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -156,7 +156,7 @@ maximum occurrence in soil and their soil DT50</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/PEC_sw_drainage_UK.html b/docs/reference/PEC_sw_drainage_UK.html
index b924c99..609a524 100644
--- a/docs/reference/PEC_sw_drainage_UK.html
+++ b/docs/reference/PEC_sw_drainage_UK.html
@@ -64,7 +64,7 @@ published on the CRC website" />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -179,7 +179,7 @@ published on the CRC website</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/PEC_sw_drift.html b/docs/reference/PEC_sw_drift.html
index cb16371..829e949 100644
--- a/docs/reference/PEC_sw_drift.html
+++ b/docs/reference/PEC_sw_drift.html
@@ -65,7 +65,7 @@ with input via spray drift." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -191,7 +191,7 @@ with input via spray drift.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/PEC_sw_exposit_drainage.html b/docs/reference/PEC_sw_exposit_drainage.html
index 62d83fa..d496268 100644
--- a/docs/reference/PEC_sw_exposit_drainage.html
+++ b/docs/reference/PEC_sw_exposit_drainage.html
@@ -69,7 +69,7 @@ details, see the discussion of the function arguments below." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -227,7 +227,7 @@ autumn/winter/early spring.</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/PEC_sw_exposit_runoff.html b/docs/reference/PEC_sw_exposit_runoff.html
index 3d7097a..c518de7 100644
--- a/docs/reference/PEC_sw_exposit_runoff.html
+++ b/docs/reference/PEC_sw_exposit_runoff.html
@@ -64,7 +64,7 @@ in the worksheet &quot;Konzept Runoff&quot;." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -220,7 +220,7 @@ in the worksheet "Konzept Runoff".</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/PEC_sw_focus.html b/docs/reference/PEC_sw_focus.html
index 138e223..1152559 100644
--- a/docs/reference/PEC_sw_focus.html
+++ b/docs/reference/PEC_sw_focus.html
@@ -69,7 +69,7 @@ to be used with the FOCUS calculator." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -355,7 +355,7 @@ should be written</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/PEC_sw_sed.html b/docs/reference/PEC_sw_sed.html
index 2e4fddc..679af8d 100644
--- a/docs/reference/PEC_sw_sed.html
+++ b/docs/reference/PEC_sw_sed.html
@@ -66,7 +66,7 @@ PEC calculator" />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -184,7 +184,7 @@ g/cm3)</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/SFO_actual_twa.html b/docs/reference/SFO_actual_twa.html
index 1361ded..16da2f9 100644
--- a/docs/reference/SFO_actual_twa.html
+++ b/docs/reference/SFO_actual_twa.html
@@ -63,7 +63,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -168,7 +168,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/SSLRC_mobility_classification.html b/docs/reference/SSLRC_mobility_classification.html
index 5c78362..6228b14 100644
--- a/docs/reference/SSLRC_mobility_classification.html
+++ b/docs/reference/SSLRC_mobility_classification.html
@@ -64,7 +64,7 @@ checked against the spreadsheet published on the CRC website" />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -158,7 +158,7 @@ checked against the spreadsheet published on the CRC website</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/TOXSWA_cwa.html b/docs/reference/TOXSWA_cwa.html
index 357fb59..c6e0e64 100644
--- a/docs/reference/TOXSWA_cwa.html
+++ b/docs/reference/TOXSWA_cwa.html
@@ -64,7 +64,7 @@ Usually, an instance of this class will be generated by read.TOXSWA_cwa." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -202,7 +202,7 @@ for the requested moving window sizes in days.</p></dd>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/chent_focus_sw.html b/docs/reference/chent_focus_sw.html
index f4c2281..24745a4 100644
--- a/docs/reference/chent_focus_sw.html
+++ b/docs/reference/chent_focus_sw.html
@@ -63,7 +63,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -184,7 +184,7 @@ systems</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/drift_data_JKI.html b/docs/reference/drift_data_JKI.html
index 1b44852..3e9e367 100644
--- a/docs/reference/drift_data_JKI.html
+++ b/docs/reference/drift_data_JKI.html
@@ -66,7 +66,7 @@ published by the German Julius-Kühn Institute (JKI)." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -158,107 +158,283 @@ as its licence is not clear.</p>
 <span class='co'># And this is the resulting data</span>
 <span class='no'>drift_data_JKI</span></div><div class='output co'>#&gt; [[1]]
 #&gt;         crop
-#&gt; distance Ackerbau Obstbau frueh Obstbau spaet
-#&gt;       1      2.77            NA            NA
-#&gt;       3        NA         29.20         15.73
-#&gt;       5      0.57         19.89          8.41
-#&gt;       10     0.29         11.81          3.60
-#&gt;       15     0.20          5.55          1.81
-#&gt;       20     0.15          2.77          1.09
-#&gt;       30     0.10          1.04          0.54
-#&gt;       40     0.07          0.52          0.32
-#&gt;       50     0.06          0.30          0.22
+#&gt; distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau
+#&gt;       1      2.77            NA            NA      NA        NA
+#&gt;       3      0.95         29.20         15.73    8.02     19.33
+#&gt;       5      0.57         19.89          8.41    3.62     11.57
+#&gt;       10     0.29         11.81          3.60    1.23      5.77
+#&gt;       15     0.20          5.55          1.81    0.65      3.84
+#&gt;       20     0.15          2.77          1.09    0.42      1.79
+#&gt;       30     0.10          1.04          0.54    0.22      0.56
+#&gt;       40     0.07          0.52          0.32    0.14      0.25
+#&gt;       50     0.06          0.30          0.22    0.10      0.13
+#&gt;         crop
+#&gt; distance Flaechenkulturen &gt; 900 l/ha Tragbar &lt; 50 cm
+#&gt;       1                        4.440            2.77
+#&gt;       3                           NA              NA
+#&gt;       5                        0.180            0.57
+#&gt;       10                       0.050            0.29
+#&gt;       15                       0.020            0.20
+#&gt;       20                       0.012            0.15
+#&gt;       30                       0.005            0.10
+#&gt;       40                       0.003            0.07
+#&gt;       50                       0.002            0.06
+#&gt;         crop
+#&gt; distance Tragbar &lt; 50 cm mit Spritzschirm Tragbar &gt; 50 cm Gleisanlagen
+#&gt;       1                             0.039              NA           NA
+#&gt;       3                                NA            8.02  0.018721696
+#&gt;       5                             0.005            3.62  0.014363896
+#&gt;       10                               NA            1.23  0.010026007
+#&gt;       15                               NA            0.65  0.008124366
+#&gt;       20                               NA            0.42  0.006998158
+#&gt;       30                               NA            0.22  0.005670811
+#&gt;       40                               NA            0.14           NA
+#&gt;       50                               NA            0.10  0.004350831
 #&gt; 
 #&gt; [[2]]
 #&gt;         crop
-#&gt; distance Ackerbau Obstbau frueh Obstbau spaet
-#&gt;       1      2.38            NA            NA
-#&gt;       3        NA         25.53         12.13
-#&gt;       5      0.47         16.87          6.81
-#&gt;       10     0.24          9.61          3.11
-#&gt;       15     0.16          5.61          1.58
-#&gt;       20     0.12          2.59          0.90
-#&gt;       30     0.08          0.87          0.40
-#&gt;       40     0.06          0.40          0.23
-#&gt;       50     0.05          0.22          0.15
+#&gt; distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau
+#&gt;       1      2.38            NA            NA      NA        NA
+#&gt;       3      0.79         25.53         12.13    7.23     17.73
+#&gt;       5      0.47         16.87          6.81    3.22      9.60
+#&gt;       10     0.24          9.61          3.11    1.07      4.18
+#&gt;       15     0.16          5.61          1.58    0.56      2.57
+#&gt;       20     0.12          2.59          0.90    0.36      1.21
+#&gt;       30     0.08          0.87          0.40    0.19      0.38
+#&gt;       40     0.06          0.40          0.23    0.12      0.17
+#&gt;       50     0.05          0.22          0.15    0.08      0.09
+#&gt;         crop
+#&gt; distance Flaechenkulturen &gt; 900 l/ha Tragbar &lt; 50 cm
+#&gt;       1                        3.780            2.38
+#&gt;       3                           NA              NA
+#&gt;       5                        0.160            0.47
+#&gt;       10                       0.040            0.24
+#&gt;       15                       0.020            0.16
+#&gt;       20                       0.011            0.12
+#&gt;       30                       0.005            0.08
+#&gt;       40                       0.003            0.06
+#&gt;       50                       0.002            0.05
+#&gt;         crop
+#&gt; distance Tragbar &lt; 50 cm mit Spritzschirm Tragbar &gt; 50 cm Gleisanlagen
+#&gt;       1                                NA          0.1900           NA
+#&gt;       3                              7.23              NA        2.120
+#&gt;       5                              3.22          0.0100        0.470
+#&gt;       10                             1.07          0.0030        0.060
+#&gt;       15                             0.56          0.0010        0.020
+#&gt;       20                             0.36          0.0008        0.008
+#&gt;       30                             0.19              NA           NA
+#&gt;       40                             0.12              NA           NA
+#&gt;       50                             0.08              NA           NA
 #&gt; 
 #&gt; [[3]]
 #&gt;         crop
-#&gt; distance Ackerbau Obstbau frueh Obstbau spaet
-#&gt;       1      2.01            NA            NA
-#&gt;       3        NA         23.96         11.01
-#&gt;       5      0.41         15.79          6.04
-#&gt;       10     0.20          8.96          2.67
-#&gt;       15     0.14          4.24          1.39
-#&gt;       20     0.10          2.01          0.80
-#&gt;       30     0.07          0.70          0.36
-#&gt;       40     0.05          0.33          0.21
-#&gt;       50     0.04          0.19          0.13
+#&gt; distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau
+#&gt;       1      2.01            NA            NA      NA        NA
+#&gt;       3      0.68         23.96         11.01    6.90     15.93
+#&gt;       5      0.41         15.79          6.04    3.07      8.57
+#&gt;       10     0.20          8.96          2.67    1.02      3.70
+#&gt;       15     0.14          4.24          1.39    0.54      2.26
+#&gt;       20     0.10          2.01          0.80    0.34      1.05
+#&gt;       30     0.07          0.70          0.36    0.18      0.34
+#&gt;       40     0.05          0.33          0.21    0.11      0.15
+#&gt;       50     0.04          0.19          0.13    0.08      0.08
+#&gt;         crop
+#&gt; distance Flaechenkulturen &gt; 900 l/ha Tragbar &lt; 50 cm
+#&gt;       1                        3.420            2.01
+#&gt;       3                           NA              NA
+#&gt;       5                        0.150            0.41
+#&gt;       10                       0.040            0.20
+#&gt;       15                       0.020            0.14
+#&gt;       20                       0.010            0.10
+#&gt;       30                       0.004            0.07
+#&gt;       40                       0.003            0.05
+#&gt;       50                       0.002            0.04
+#&gt;         crop
+#&gt; distance Tragbar &lt; 50 cm mit Spritzschirm Tragbar &gt; 50 cm Gleisanlagen
+#&gt;       1                                NA          0.1400           NA
+#&gt;       3                              6.90              NA        1.590
+#&gt;       5                              3.07          0.0100        0.360
+#&gt;       10                             1.02          0.0020        0.050
+#&gt;       15                             0.54          0.0010        0.010
+#&gt;       20                             0.34          0.0006        0.006
+#&gt;       30                             0.18              NA           NA
+#&gt;       40                             0.11              NA           NA
+#&gt;       50                             0.08              NA           NA
 #&gt; 
 #&gt; [[4]]
 #&gt;         crop
-#&gt; distance Ackerbau Obstbau frueh Obstbau spaet
-#&gt;       1      1.85            NA            NA
-#&gt;       3        NA         23.61         10.12
-#&gt;       5      0.38         15.42          5.60
-#&gt;       10     0.19          8.66          2.50
-#&gt;       15     0.13          4.01          1.28
-#&gt;       20     0.10          1.89          0.75
-#&gt;       30     0.06          0.66          0.35
-#&gt;       40     0.05          0.31          0.20
-#&gt;       50     0.04          0.17          0.13
+#&gt; distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau
+#&gt;       1      1.85            NA            NA      NA        NA
+#&gt;       3      0.62         23.61         10.12    6.71     15.38
+#&gt;       5      0.38         15.42          5.60    2.99      8.26
+#&gt;       10     0.19          8.66          2.50    0.99      3.55
+#&gt;       15     0.13          4.01          1.28    0.52      2.17
+#&gt;       20     0.10          1.89          0.75    0.33      0.93
+#&gt;       30     0.06          0.66          0.35    0.17      0.31
+#&gt;       40     0.05          0.31          0.20    0.11      0.14
+#&gt;       50     0.04          0.17          0.13    0.08      0.08
+#&gt;         crop
+#&gt; distance Flaechenkulturen &gt; 900 l/ha Tragbar &lt; 50 cm
+#&gt;       1                        2.290            1.85
+#&gt;       3                           NA              NA
+#&gt;       5                        0.120            0.38
+#&gt;       10                       0.030            0.19
+#&gt;       15                       0.020            0.13
+#&gt;       20                       0.009            0.10
+#&gt;       30                       0.004            0.06
+#&gt;       40                       0.002            0.05
+#&gt;       50                       0.002            0.04
+#&gt;         crop
+#&gt; distance Tragbar &lt; 50 cm mit Spritzschirm Tragbar &gt; 50 cm Gleisanlagen
+#&gt;       1                                NA          0.1300           NA
+#&gt;       3                              6.71              NA        1.360
+#&gt;       5                              2.99          0.0100        0.310
+#&gt;       10                             0.99          0.0020        0.040
+#&gt;       15                             0.52          0.0010        0.010
+#&gt;       20                             0.33          0.0005        0.005
+#&gt;       30                             0.17              NA           NA
+#&gt;       40                             0.11              NA           NA
+#&gt;       50                             0.08              NA           NA
 #&gt; 
 #&gt; [[5]]
 #&gt;         crop
-#&gt; distance Ackerbau Obstbau frueh Obstbau spaet
-#&gt;       1      1.75            NA            NA
-#&gt;       3        NA         23.12          9.74
-#&gt;       5      0.36         15.06          5.41
-#&gt;       10     0.18          8.42          2.43
-#&gt;       15     0.12          3.83          1.24
-#&gt;       20     0.09          1.81          0.72
-#&gt;       30     0.06          0.63          0.34
-#&gt;       40     0.05          0.30          0.20
-#&gt;       50     0.04          0.17          0.13
+#&gt; distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau
+#&gt;       1      1.75            NA            NA      NA        NA
+#&gt;       3      0.59         23.12          9.74    6.59     15.12
+#&gt;       5      0.36         15.06          5.41    2.93      7.99
+#&gt;       10     0.18          8.42          2.43    0.98      3.36
+#&gt;       15     0.12          3.83          1.24    0.51      2.03
+#&gt;       20     0.09          1.81          0.72    0.33      0.88
+#&gt;       30     0.06          0.63          0.34    0.17      0.29
+#&gt;       40     0.05          0.30          0.20    0.11      0.14
+#&gt;       50     0.04          0.17          0.13    0.08      0.07
+#&gt;         crop
+#&gt; distance Flaechenkulturen &gt; 900 l/ha Tragbar &lt; 50 cm
+#&gt;       1                        2.120            1.75
+#&gt;       3                           NA              NA
+#&gt;       5                        0.110            0.36
+#&gt;       10                       0.030            0.18
+#&gt;       15                       0.010            0.12
+#&gt;       20                       0.008            0.09
+#&gt;       30                       0.004            0.06
+#&gt;       40                       0.002            0.05
+#&gt;       50                       0.002            0.04
+#&gt;         crop
+#&gt; distance Tragbar &lt; 50 cm mit Spritzschirm Tragbar &gt; 50 cm Gleisanlagen
+#&gt;       1                                NA          0.1200           NA
+#&gt;       3                              6.59              NA        1.190
+#&gt;       5                              2.93          0.0100        0.270
+#&gt;       10                             0.98          0.0020        0.040
+#&gt;       15                             0.51          0.0010        0.010
+#&gt;       20                             0.33          0.0005        0.005
+#&gt;       30                             0.17              NA           NA
+#&gt;       40                             0.11              NA           NA
+#&gt;       50                             0.08              NA           NA
 #&gt; 
 #&gt; [[6]]
 #&gt;         crop
-#&gt; distance Ackerbau Obstbau frueh Obstbau spaet
-#&gt;       1      1.64            NA            NA
-#&gt;       3        NA         22.76          9.21
-#&gt;       5      0.34         14.64          5.18
-#&gt;       10     0.17          8.04          2.38
-#&gt;       15     0.11          3.71          1.20
-#&gt;       20     0.09          1.75          0.68
-#&gt;       30     0.06          0.61          0.31
-#&gt;       40     0.04          0.29          0.17
-#&gt;       50     0.03          0.16          0.11
+#&gt; distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau
+#&gt;       1      1.64            NA            NA      NA        NA
+#&gt;       3      0.56         22.76          9.21    6.41     14.90
+#&gt;       5      0.34         14.64          5.18    2.85      7.79
+#&gt;       10     0.17          8.04          2.38    0.95      3.23
+#&gt;       15     0.11          3.71          1.20    0.50      1.93
+#&gt;       20     0.09          1.75          0.68    0.32      0.83
+#&gt;       30     0.06          0.61          0.31    0.17      0.28
+#&gt;       40     0.04          0.29          0.17    0.11      0.13
+#&gt;       50     0.03          0.16          0.11    0.07      0.07
+#&gt;         crop
+#&gt; distance Flaechenkulturen &gt; 900 l/ha Tragbar &lt; 50 cm
+#&gt;       1                        1.980            1.64
+#&gt;       3                           NA              NA
+#&gt;       5                        0.100            0.34
+#&gt;       10                       0.030            0.17
+#&gt;       15                       0.010            0.11
+#&gt;       20                       0.008            0.09
+#&gt;       30                       0.004            0.06
+#&gt;       40                       0.002            0.04
+#&gt;       50                       0.001            0.03
+#&gt;         crop
+#&gt; distance Tragbar &lt; 50 cm mit Spritzschirm Tragbar &gt; 50 cm Gleisanlagen
+#&gt;       1                                NA          0.1100           NA
+#&gt;       3                              6.41              NA        1.070
+#&gt;       5                              2.85          0.0100        0.250
+#&gt;       10                             0.95          0.0020        0.030
+#&gt;       15                             0.50          0.0010        0.010
+#&gt;       20                             0.32          0.0004        0.005
+#&gt;       30                             0.17              NA           NA
+#&gt;       40                             0.11              NA           NA
+#&gt;       50                             0.07              NA           NA
 #&gt; 
 #&gt; [[7]]
 #&gt;         crop
-#&gt; distance Ackerbau Obstbau frueh Obstbau spaet
-#&gt;       1      1.61            NA            NA
-#&gt;       3        NA         22.69          9.10
-#&gt;       5      0.33         14.45          5.11
-#&gt;       10     0.17          7.83          2.33
-#&gt;       15     0.11          3.62          1.20
-#&gt;       20     0.08          1.71          0.67
-#&gt;       30     0.06          0.60          0.30
-#&gt;       40     0.04          0.28          0.17
-#&gt;       50     0.03          0.16          0.11
+#&gt; distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau
+#&gt;       1      1.61            NA            NA      NA        NA
+#&gt;       3      0.55         22.69          9.10    6.33     14.63
+#&gt;       5      0.33         14.45          5.11    2.81      7.60
+#&gt;       10     0.17          7.83          2.33    0.94      3.13
+#&gt;       15     0.11          3.62          1.20    0.49      1.86
+#&gt;       20     0.08          1.71          0.67    0.31      0.81
+#&gt;       30     0.06          0.60          0.30    0.16      0.26
+#&gt;       40     0.04          0.28          0.17    0.10      0.12
+#&gt;       50     0.03          0.16          0.11    0.07      0.06
+#&gt;         crop
+#&gt; distance Flaechenkulturen &gt; 900 l/ha Tragbar &lt; 50 cm
+#&gt;       1                        1.930            1.61
+#&gt;       3                           NA              NA
+#&gt;       5                        0.100            0.33
+#&gt;       10                       0.030            0.17
+#&gt;       15                       0.010            0.11
+#&gt;       20                       0.008            0.08
+#&gt;       30                       0.004            0.06
+#&gt;       40                       0.002            0.04
+#&gt;       50                       0.001            0.03
+#&gt;         crop
+#&gt; distance Tragbar &lt; 50 cm mit Spritzschirm Tragbar &gt; 50 cm Gleisanlagen
+#&gt;       1                                NA          0.1100           NA
+#&gt;       3                              6.33              NA        0.960
+#&gt;       5                              2.81          0.0100        0.230
+#&gt;       10                             0.94          0.0020        0.030
+#&gt;       15                             0.49          0.0010        0.010
+#&gt;       20                             0.31          0.0004        0.004
+#&gt;       30                             0.16              NA           NA
+#&gt;       40                             0.10              NA           NA
+#&gt;       50                             0.07              NA           NA
 #&gt; 
 #&gt; [[8]]
 #&gt;         crop
-#&gt; distance Ackerbau Obstbau frueh Obstbau spaet
-#&gt;       1      1.52            NA            NA
-#&gt;       3        NA         22.24          8.66
-#&gt;       5      0.31         14.09          4.92
-#&gt;       10     0.16          7.58          2.29
-#&gt;       15     0.11          3.48          1.14
-#&gt;       20     0.08          1.65          0.65
-#&gt;       30     0.05          0.57          0.29
-#&gt;       40     0.04          0.27          0.16
-#&gt;       50     0.03          0.15          0.11
+#&gt; distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau
+#&gt;       1      1.52            NA            NA      NA        NA
+#&gt;       3      0.52         22.24          8.66    6.26     13.53
+#&gt;       5      0.31         14.09          4.92    2.78      7.15
+#&gt;       10     0.16          7.58          2.29    0.93      3.01
+#&gt;       15     0.11          3.48          1.14    0.49      1.82
+#&gt;       20     0.08          1.65          0.65    0.31      0.78
+#&gt;       30     0.05          0.57          0.29    0.16      0.25
+#&gt;       40     0.04          0.27          0.16    0.10      0.12
+#&gt;       50     0.03          0.15          0.11    0.07      0.06
+#&gt;         crop
+#&gt; distance Flaechenkulturen &gt; 900 l/ha Tragbar &lt; 50 cm
+#&gt;       1                        1.640            1.52
+#&gt;       3                           NA              NA
+#&gt;       5                        0.090            0.31
+#&gt;       10                       0.020            0.16
+#&gt;       15                       0.010            0.11
+#&gt;       20                       0.007            0.08
+#&gt;       30                       0.003            0.05
+#&gt;       40                       0.002            0.04
+#&gt;       50                       0.001            0.03
+#&gt;         crop
+#&gt; distance Tragbar &lt; 50 cm mit Spritzschirm Tragbar &gt; 50 cm Gleisanlagen
+#&gt;       1                                NA           1e-01           NA
+#&gt;       3                              6.26              NA        0.890
+#&gt;       5                              2.78           1e-02        0.210
+#&gt;       10                             0.93           1e-03        0.030
+#&gt;       15                             0.49           1e-03        0.010
+#&gt;       20                             0.31           4e-04        0.004
+#&gt;       30                             0.16              NA           NA
+#&gt;       40                             0.10              NA           NA
+#&gt;       50                             0.07              NA           NA
 #&gt; </div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
@@ -283,7 +459,7 @@ as its licence is not clear.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/endpoint.html b/docs/reference/endpoint.html
index b4e4516..d80194b 100644
--- a/docs/reference/endpoint.html
+++ b/docs/reference/endpoint.html
@@ -66,7 +66,7 @@ this function." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -223,7 +223,7 @@ exponent is often called 1/n.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/geomean.html b/docs/reference/geomean.html
index 80684b5..f08009b 100644
--- a/docs/reference/geomean.html
+++ b/docs/reference/geomean.html
@@ -66,7 +66,7 @@ returns 0 if at least one element of the vector is 0." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -162,7 +162,7 @@ returns 0 if at least one element of the vector is 0.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/get_vertex.html b/docs/reference/get_vertex.html
index 1e123f1..3aeccf4 100644
--- a/docs/reference/get_vertex.html
+++ b/docs/reference/get_vertex.html
@@ -64,7 +64,7 @@ https://stackoverflow.com/a/717791" />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -144,7 +144,7 @@ https://stackoverflow.com/a/717791</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/index.html b/docs/reference/index.html
index dd8d213..ea17397 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -60,7 +60,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -366,7 +366,7 @@ water concentrations</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/max_twa.html b/docs/reference/max_twa.html
index d38e382..b5b4444 100644
--- a/docs/reference/max_twa.html
+++ b/docs/reference/max_twa.html
@@ -67,7 +67,7 @@ max_twa." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -193,7 +193,7 @@ SFO, FOMC and DFOP models and to the parent compound</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/one_box-2.png b/docs/reference/one_box-2.png
index eb60bd6..0da7911 100644
--- a/docs/reference/one_box-2.png
+++ b/docs/reference/one_box-2.png
diff --git a/docs/reference/one_box-3.png b/docs/reference/one_box-3.png
index fcb308b..c770252 100644
--- a/docs/reference/one_box-3.png
+++ b/docs/reference/one_box-3.png
diff --git a/docs/reference/one_box.html b/docs/reference/one_box.html
index 799ca6c..42f4541 100644
--- a/docs/reference/one_box.html
+++ b/docs/reference/one_box.html
@@ -63,7 +63,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -175,8 +175,7 @@ all observed variables.</p></td>
 <span class='no'>pred_1</span> <span class='kw'>&lt;-</span> <span class='fu'>one_box</span>(<span class='no'>fit</span>)
 <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>pred_1</span>)</div><div class='img'><img src='one_box-2.png' alt='' width='700' height='433' /></div><div class='input'>
 <span class='co'># Use a model with more than one observed variable</span>
-<span class='no'>m_2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinmod'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinsub'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinsub'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinfit'>mkinfit</a></span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
-<span class='no'>pred_2</span> <span class='kw'>&lt;-</span> <span class='fu'>one_box</span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='st'>"model"</span>)
+<span class='no'>m_2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinmod'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinsub'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinsub'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinfit'>mkinfit</a></span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='no'>pred_2</span> <span class='kw'>&lt;-</span> <span class='fu'>one_box</span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='st'>"model"</span>)
 <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>pred_2</span>)</div><div class='img'><img src='one_box-3.png' alt='' width='700' height='433' /></div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
@@ -198,7 +197,7 @@ all observed variables.</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/perc_runoff_exposit.html b/docs/reference/perc_runoff_exposit.html
index 737dbb5..38e61cc 100644
--- a/docs/reference/perc_runoff_exposit.html
+++ b/docs/reference/perc_runoff_exposit.html
@@ -63,7 +63,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -163,7 +163,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/perc_runoff_reduction_exposit.html b/docs/reference/perc_runoff_reduction_exposit.html
index 818e2be..56ccca8 100644
--- a/docs/reference/perc_runoff_reduction_exposit.html
+++ b/docs/reference/perc_runoff_reduction_exposit.html
@@ -63,7 +63,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -162,7 +162,7 @@ from which the values were taken.</p><dl class='dl-horizontal'>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/pfm_degradation.html b/docs/reference/pfm_degradation.html
index a9c94fb..9c62bf7 100644
--- a/docs/reference/pfm_degradation.html
+++ b/docs/reference/pfm_degradation.html
@@ -63,7 +63,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -174,7 +174,7 @@ is calculated (SFO model).</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/plot.TOXSWA_cwa.html b/docs/reference/plot.TOXSWA_cwa.html
index 80a8095..31435e8 100644
--- a/docs/reference/plot.TOXSWA_cwa.html
+++ b/docs/reference/plot.TOXSWA_cwa.html
@@ -64,7 +64,7 @@ segment of a TOXSWA surface water body." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -194,7 +194,7 @@ to suspended matter?</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/plot.one_box-3.png b/docs/reference/plot.one_box-3.png
index 183035a..9767472 100644
--- a/docs/reference/plot.one_box-3.png
+++ b/docs/reference/plot.one_box-3.png
diff --git a/docs/reference/plot.one_box.html b/docs/reference/plot.one_box.html
index bdbece5..5bc6847 100644
--- a/docs/reference/plot.one_box.html
+++ b/docs/reference/plot.one_box.html
@@ -63,7 +63,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -163,8 +163,7 @@ be shown if max_twa is not NULL.</p></td>
     <pre class="examples"><div class='input'><span class='no'>dfop_pred</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='st'>"DFOP"</span>, <span class='kw'>parms</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>k1</span> <span class='kw'>=</span> <span class='fl'>0.2</span>, <span class='kw'>k2</span> <span class='kw'>=</span> <span class='fl'>0.02</span>, <span class='kw'>g</span> <span class='kw'>=</span> <span class='fl'>0.7</span>))
 <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>dfop_pred</span>)</div><div class='img'><img src='plot.one_box-1.png' alt='' width='700' height='433' /></div><div class='input'><span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='fu'><a href='sawtooth.html'>sawtooth</a></span>(<span class='no'>dfop_pred</span>, <span class='fl'>3</span>, <span class='fl'>7</span>), <span class='kw'>max_twa</span> <span class='kw'>=</span> <span class='fl'>21</span>)</div><div class='img'><img src='plot.one_box-2.png' alt='' width='700' height='433' /></div><div class='input'>
 <span class='co'># Use a fitted mkinfit model</span>
-<span class='no'>m_2</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
-<span class='no'>pred_2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='fl'>1</span>)
+<span class='no'>m_2</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='no'>pred_2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='fl'>1</span>)
 <span class='no'>pred_2_saw</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='sawtooth.html'>sawtooth</a></span>(<span class='no'>pred_2</span>, <span class='fl'>2</span>, <span class='fl'>7</span>)
 <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>pred_2_saw</span>, <span class='kw'>max_twa</span> <span class='kw'>=</span> <span class='fl'>21</span>, <span class='kw'>max_twa_var</span> <span class='kw'>=</span> <span class='st'>"m1"</span>)</div><div class='img'><img src='plot.one_box-3.png' alt='' width='700' height='433' /></div></pre>
   </div>
@@ -187,7 +186,7 @@ be shown if max_twa is not NULL.</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/read.TOXSWA_cwa.html b/docs/reference/read.TOXSWA_cwa.html
index 6a0ee74..881aa87 100644
--- a/docs/reference/read.TOXSWA_cwa.html
+++ b/docs/reference/read.TOXSWA_cwa.html
@@ -68,7 +68,7 @@ renamed to ConLiqWatLay in the out file." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -202,7 +202,7 @@ generating event statistics.</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/sawtooth-2.png b/docs/reference/sawtooth-2.png
index 183035a..9767472 100644
--- a/docs/reference/sawtooth-2.png
+++ b/docs/reference/sawtooth-2.png
diff --git a/docs/reference/sawtooth.html b/docs/reference/sawtooth.html
index 638d290..39a2e99 100644
--- a/docs/reference/sawtooth.html
+++ b/docs/reference/sawtooth.html
@@ -65,7 +65,7 @@ times, with an interval i." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -145,8 +145,7 @@ the corresponding amounts applied in the second column.</p></td>
     <pre class="examples"><div class='input'><span class='no'>applications</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/data.frame'>data.frame</a></span>(<span class='kw'>time</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>14</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>7</span>), <span class='kw'>amount</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='fl'>1</span>, <span class='fl'>2</span>, <span class='fl'>3</span>))
 <span class='no'>pred</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='fl'>10</span>)
 <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='fu'>sawtooth</span>(<span class='no'>pred</span>, <span class='kw'>applications</span> <span class='kw'>=</span> <span class='no'>applications</span>))</div><div class='img'><img src='sawtooth-1.png' alt='' width='700' height='433' /></div><div class='input'>
-<span class='no'>m_2</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
-<span class='no'>pred_2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='fl'>1</span>)
+<span class='no'>m_2</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='no'>pred_2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='fl'>1</span>)
 <span class='no'>pred_2_saw</span> <span class='kw'>&lt;-</span> <span class='fu'>sawtooth</span>(<span class='no'>pred_2</span>, <span class='fl'>2</span>, <span class='fl'>7</span>)
 <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>pred_2_saw</span>, <span class='kw'>max_twa</span> <span class='kw'>=</span> <span class='fl'>21</span>, <span class='kw'>max_twa_var</span> <span class='kw'>=</span> <span class='st'>"m1"</span>)</div><div class='img'><img src='sawtooth-2.png' alt='' width='700' height='433' /></div><div class='input'>
 <span class='fu'><a href='max_twa.html'>max_twa</a></span>(<span class='no'>pred_2_saw</span>)</div><div class='output co'>#&gt; $max
@@ -179,7 +178,7 @@ the corresponding amounts applied in the second column.</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/soil_scenario_data_EFSA_2015.html b/docs/reference/soil_scenario_data_EFSA_2015.html
index 6051cc2..3a2f122 100644
--- a/docs/reference/soil_scenario_data_EFSA_2015.html
+++ b/docs/reference/soil_scenario_data_EFSA_2015.html
@@ -65,7 +65,7 @@ scenario and model adjustment factors from p. 15 and p. 17 are included." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -185,7 +185,7 @@ scenario and model adjustment factors from p. 15 and p. 17 are included.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/soil_scenario_data_EFSA_2017.html b/docs/reference/soil_scenario_data_EFSA_2017.html
index 082fb7b..acbfceb 100644
--- a/docs/reference/soil_scenario_data_EFSA_2017.html
+++ b/docs/reference/soil_scenario_data_EFSA_2017.html
@@ -65,7 +65,7 @@ scenario and model adjustment factors from p. 16 and p. 18 are included." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -166,7 +166,7 @@ scenario and model adjustment factors from p. 16 and p. 18 are included.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/docs/reference/twa.html b/docs/reference/twa.html
index 69efa7f..9fdcc5f 100644
--- a/docs/reference/twa.html
+++ b/docs/reference/twa.html
@@ -65,7 +65,7 @@ is after one window has passed." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span>
       </span>
     </div>
 
@@ -172,7 +172,7 @@ is after one window has passed.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
 </div>
       </footer>
    </div>
diff --git a/test.log b/test.log
index abf4825..bd894ec 100644
--- a/test.log
+++ b/test.log
@@ -5,18 +5,18 @@ Testing pfm
 ✔ | OK F W S | Context
 
 ⠏ |  0       | Exposit calculations
 ⠋ |  1       | Exposit calculations
 ⠙ |  2       | Exposit calculations
 ⠹ |  3       | Exposit calculations
 ⠸ |  4       | Exposit calculations
 ⠼ |  5       | Exposit calculations
 ⠴ |  6       | Exposit calculations
 ⠦ |  7       | Exposit calculations
 ✔ |  7       | Exposit calculations
 
 ⠏ |  0       | Geometric mean calculation
 ⠋ |  1       | Geometric mean calculation
 ⠙ |  2       | Geometric mean calculation
 ⠹ |  3       | Geometric mean calculation
 ⠸ |  4       | Geometric mean calculation
 ⠼ |  5       | Geometric mean calculation
 ⠴ |  6       | Geometric mean calculation
 ✔ |  6       | Geometric mean calculation
-
-⠏ |  0       | Check max_twa for parent mkinfit models against analytical solutions
-⠋ |  1       | Check max_twa for parent mkinfit models against analytical solutions
-✔ |  1       | Check max_twa for parent mkinfit models against analytical solutions [1.0 s]
+
+⠏ |  0       | Check max_twa for parent mkinfit models against analytical solutions
+⠋ |  1       | Check max_twa for parent mkinfit models against analytical solutions
+✔ |  1       | Check max_twa for parent mkinfit models against analytical solutions [2.0 s]
 
 ⠏ |  0       | Simple PEC sediment calculations
 ⠋ |  1       | Simple PEC sediment calculations
 ✔ |  1       | Simple PEC sediment calculations
 
 ⠏ |  0       | Simple PEC soil calculations
 ⠋ |  1       | Simple PEC soil calculations
 ⠙ |  2       | Simple PEC soil calculations
 ⠹ |  3       | Simple PEC soil calculations
 ⠸ |  4       | Simple PEC soil calculations
 ⠼ |  5       | Simple PEC soil calculations
 ⠴ |  6       | Simple PEC soil calculations
 ⠦ |  7       | Simple PEC soil calculations
 ⠧ |  8       | Simple PEC soil calculations
 ⠇ |  9       | Simple PEC soil calculations
 ⠏ | 10       | Simple PEC soil calculations
 ⠋ | 11       | Simple PEC soil calculations
 ⠙ | 12       | Simple PEC soil calculations
 ⠹ | 13       | Simple PEC soil calculations
 ⠸ | 14       | Simple PEC soil calculations
 ⠼ | 15       | Simple PEC soil calculations
 ⠴ | 16       | Simple PEC soil calculations
 ⠦ | 17       | Simple PEC soil calculations
 ✔ | 17       | Simple PEC soil calculations [0.2 s]
 
 ⠏ |  0       | Simple PEC surface water calculations with drift entry
 ⠋ |  1       | Simple PEC surface water calculations with drift entry
 ⠙ |  2       | Simple PEC surface water calculations with drift entry
 ✔ |  2       | Simple PEC surface water calculations with drift entry
 
 ⠏ |  0       | Actual and time weighted average concentrations for SFO kinetics
 ⠋ |  1       | Actual and time weighted average concentrations for SFO kinetics
 ✔ |  1       | Actual and time weighted average concentrations for SFO kinetics
 
 ⠏ |  0       | FOCUS Step 1 calculations
 ⠋ |  1       | FOCUS Step 1 calculations
 ⠙ |  2       | FOCUS Step 1 calculations
 ⠹ |  3       | FOCUS Step 1 calculations
 ⠸ |  4       | FOCUS Step 1 calculations
 ⠼ |  5       | FOCUS Step 1 calculations
 ⠴ |  6       | FOCUS Step 1 calculations
 ⠦ |  7       | FOCUS Step 1 calculations
 ⠧ |  8       | FOCUS Step 1 calculations
 ⠇ |  9       | FOCUS Step 1 calculations
 ✔ |  9       | FOCUS Step 1 calculations [0.1 s]
 
 ⠏ |  0       | FOCUS Steps 12 input files
 ⠋ |  1       | FOCUS Steps 12 input files
 ⠙ |  2       | FOCUS Steps 12 input files
 ⠹ |  3       | FOCUS Steps 12 input files
 ⠸ |  4       | FOCUS Steps 12 input files
 ⠼ |  5       | FOCUS Steps 12 input files
 ⠴ |  6       | FOCUS Steps 12 input files
 ⠦ |  7       | FOCUS Steps 12 input files
 ⠧ |  8       | FOCUS Steps 12 input files
 ✔ |  8       | FOCUS Steps 12 input files
-
-⠏ |  0       | Read and analyse TOXSWA cwa files
-⠋ |  1       | Read and analyse TOXSWA cwa files
-⠙ |  2       | Read and analyse TOXSWA cwa files
-⠹ |  3       | Read and analyse TOXSWA cwa files
-⠸ |  4       | Read and analyse TOXSWA cwa files
-⠼ |  5       | Read and analyse TOXSWA cwa files
-⠴ |  6       | Read and analyse TOXSWA cwa files
-⠦ |  7       | Read and analyse TOXSWA cwa files
-✔ |  7       | Read and analyse TOXSWA cwa files [5.5 s]
+
+⠏ |  0       | Read and analyse TOXSWA cwa files
+⠋ |  1       | Read and analyse TOXSWA cwa files
+⠙ |  2       | Read and analyse TOXSWA cwa files
+⠹ |  3       | Read and analyse TOXSWA cwa files
+⠸ |  4       | Read and analyse TOXSWA cwa files
+⠼ |  5       | Read and analyse TOXSWA cwa files
+⠴ |  6       | Read and analyse TOXSWA cwa files
+⠦ |  7       | Read and analyse TOXSWA cwa files
+✔ |  7       | Read and analyse TOXSWA cwa files [5.6 s]
 
 ⠏ |  0       | UK drainage PEC calculations
 ⠋ |  1       | UK drainage PEC calculations
 ⠙ |  2       | UK drainage PEC calculations
 ⠹ |  3       | UK drainage PEC calculations
 ⠸ |  4       | UK drainage PEC calculations
 ⠼ |  5       | UK drainage PEC calculations
 ⠴ |  6       | UK drainage PEC calculations
 ⠦ |  7       | UK drainage PEC calculations
 ⠧ |  8       | UK drainage PEC calculations
 ⠇ |  9       | UK drainage PEC calculations
 ⠏ | 10       | UK drainage PEC calculations
 ⠋ | 11       | UK drainage PEC calculations
 ⠙ | 12       | UK drainage PEC calculations
 ✔ | 12       | UK drainage PEC calculations
 
 ══ Results ═════════════════════════════════════════════════════════════════════════════════════════
-Duration: 7.0 s
+Duration: 8.0 s
 
 OK:       71
 Failed:   0
author	Johannes Ranke <jranke@uni-bremen.de>	2019-04-25 11:50:35 +0200
committer	Johannes Ranke <jranke@uni-bremen.de>	2019-04-25 11:50:35 +0200
commit	451b332c8888bac8279340b086abb3b714ac3ae1 (patch)
tree	9704ae10e8670ff7ec750e612d223739ebafa316
parent	3bb842b93107dd6207610de1fe5b44be66779e4d (diff)