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| author | Johannes Ranke <jranke@uni-bremen.de> | 2017-01-18 22:41:01 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2017-01-18 22:50:14 +0100 |
| commit | a76221d87485029444c8e684022ca606a0c7e68d (patch) | |
| tree | c95052ee51b35f6c5ab87bd6f27ef2877f536838 /docs/pfm_degradation.html | |
| parent | a1d9f93138c2cfed92a683e37e72c737d52b7ad7 (diff) | |
Update static docs using pkgdown
- Add _pkgdown.yml for a structured function/data reference
- Make seealso links active
- Make mkinfit calls quiet
- Use pkgdown branch from pull request hadley/pkgdown#229 to have topics
ordered
Diffstat (limited to 'docs/pfm_degradation.html')
| -rw-r--r-- | docs/pfm_degradation.html | 123 |
1 files changed, 0 insertions, 123 deletions
diff --git a/docs/pfm_degradation.html b/docs/pfm_degradation.html deleted file mode 100644 index 38e9e2b..0000000 --- a/docs/pfm_degradation.html +++ /dev/null @@ -1,123 +0,0 @@ -<!DOCTYPE html> -<html lang="en"> - <head> - <meta charset="utf-8"> -<title>pfm_degradation. pfm 0.3-8</title> -<meta name="viewport" content="width=device-width, initial-scale=1.0"> -<meta name="author" content=" -Johannes Ranke -"> - -<link href="css/bootstrap.css" rel="stylesheet"> -<link href="css/bootstrap-responsive.css" rel="stylesheet"> -<link href="css/highlight.css" rel="stylesheet"> -<link href="css/staticdocs.css" rel="stylesheet"> - -<!--[if lt IE 9]> - <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> -<![endif]--> - -<script type="text/x-mathjax-config"> - MathJax.Hub.Config({ - tex2jax: { - inlineMath: [ ['$','$'], ["\\(","\\)"] ], - processEscapes: true - } - }); -</script> -<script type="text/javascript" - src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> -</script> - </head> - - <body> - <div class="navbar"> - <div class="navbar-inner"> - <div class="container"> - <a class="brand" href="index.html">pfm 0.3-8</a> - <div class="nav"> - <ul class="nav"> - <li><a href="index.html">Home</a></li> - <li><a href="reference.html">Reference</a></li> - </ul> - </div> - </div> - </div> -</div> - - - <div class="container"> - <header> - - </header> - - <h1>Calculate a time course of relative concentrations based on an mkinmod model</h1> - -<div class="row"> - <div class="span8"> - <h2>Usage</h2> - <pre><span class="functioncall"><a href='pfm_degradation.html'>pfm_degradation</a></span><span class="keyword">(</span><span class="argument">model</span> <span class="argument">=</span> <span class="string">"SFO"</span><span class="keyword">,</span> <span class="argument">DT50</span> <span class="argument">=</span> <span class="number">1000</span><span class="keyword">,</span> <span class="argument">parms</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/c'>c</a></span><span class="keyword">(</span><span class="argument">k_parent_sink</span> <span class="argument">=</span> - <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/Log'>log</a></span><span class="keyword">(</span><span class="number">2</span><span class="keyword">)</span><span class="keyword">/</span><span class="symbol">DT50</span><span class="keyword">)</span><span class="keyword">,</span> <span class="argument">years</span> <span class="argument">=</span> <span class="number">1</span><span class="keyword">,</span> <span class="argument">step_days</span> <span class="argument">=</span> <span class="number">1</span><span class="keyword">,</span> <span class="argument">times</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span><span class="keyword">(</span><span class="number">0</span><span class="keyword">,</span> <span class="symbol">years</span> <span class="keyword">*</span> <span class="number">365</span><span class="keyword">,</span> <span class="argument">by</span> <span class="argument">=</span> - <span class="symbol">step_days</span><span class="keyword">)</span><span class="keyword">)</span></pre> - - <h2>Arguments</h2> - <dl> - <dt>model</dt> - <dd>The degradation model to be used. Either a parent only model like -'SFO' or 'FOMC', or an mkinmod object</dd> - <dt>DT50</dt> - <dd>The half-life. This is only used when simple exponential decline -is calculated (SFO model).</dd> - <dt>parms</dt> - <dd>The parameters used for the degradation model</dd> - <dt>years</dt> - <dd>For how many years should the degradation be predicted?</dd> - <dt>step_days</dt> - <dd>What step size in days should the output have?</dd> - <dt>times</dt> - <dd>The output times</dd> - </dl> - - <div class="Description"> - <h2>Description</h2> - - <p>Calculate a time course of relative concentrations based on an mkinmod model</p> - - </div> - - <h2 id="examples">Examples</h2> - <pre class="examples"><div class='input'><span class="functioncall"><a href='http://www.rdocumentation.org/packages/utils/topics/head'>head</a></span><span class="keyword">(</span><span class="functioncall"><a href='pfm_degradation.html'>pfm_degradation</a></span><span class="keyword">(</span><span class="string">"SFO"</span><span class="keyword">,</span> <span class="argument">DT50</span> <span class="argument">=</span> <span class="number">10</span><span class="keyword">)</span><span class="keyword">)</span></div> -<div class='output'> time parent -1 0 1.0000000 -2 1 0.9330330 -3 2 0.8705506 -4 3 0.8122524 -5 4 0.7578583 -6 5 0.7071068 -</div></pre> - </div> - <div class="span4 sidebar"> - <!-- <ul> - <li>pfm_degradation</li> - </ul> - <ul> - - </ul> --> - - - - <h2>Author</h2> - -Johannes Ranke - - - </div> -</div> - - <footer> - <p class="pull-right"><a href="#">Back to top</a></p> -<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="https://getbootstrap.com/2.0.4/">bootstrap</a>.</p> - </footer> - </div> - </body> -</html>
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