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authorRanke Johannes <johannes.ranke@agroscope.admin.ch>2024-01-31 13:16:17 +0100
committerRanke Johannes <johannes.ranke@agroscope.admin.ch>2024-01-31 13:27:50 +0100
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tree7ca136834857c12449f50a1e086a589cc9b79e2e /docs/reference/EFSA_GW_interception_2014.html
parent64f629efbe666bae56f48a309adf33d1eb09c358 (diff)
Reorganise data generation
- Use inst/data_generation for R code generating data as in some of my other packages - data/*.RData files were checked using https://github.com/jranke/dotfiles/blob/main/bin/rda_diff contents were not changed - Remove ChangeLog, the history is in the git logs - Update docs and some links contained therein - use \doi{} markup - Move logs to log directory
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<h1>Subset of EFSA crop interception default values for groundwater modelling</h1>
@@ -112,82 +43,58 @@
<p>Subset of EFSA crop interception default values for groundwater modelling</p>
</div>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="va">EFSA_GW_interception_2014</span></span></code></pre></div>
+ </div>
-
- <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
-
+ <div id="format">
+ <h2>Format</h2>
<p>A matrix containing interception values, currently only for some selected crops</p>
- <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
-
+ </div>
+ <div id="source">
+ <h2>Source</h2>
<p>European Food Safety Authority (2014) EFSA Guidance Document for
evaluating laboratory and field dissipation studies to obtain DegT50 values
of active substances of plant protection products and transformation
products of these active substances in soil. <em>EFSA Journal</em>
<b>12</b>(5):3662, 37 pp., doi:10.2903/j.efsa.2014.3662</p>
+ </div>
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='kw'>if</span> (<span class='fl'>FALSE</span>) {
- <span class='co'># This is the code that was used to define the data</span>
- <span class='no'>bbch</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste0</a></span>(<span class='fl'>0</span>:<span class='fl'>9</span>, <span class='st'>"x"</span>)
- <span class='no'>crops</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(
- <span class='st'>"Beans (field + vegetable)"</span>,
- <span class='st'>"Peas"</span>,
- <span class='st'>"Summer oilseed rape"</span>, <span class='st'>"Winter oilseed rape"</span>,
- <span class='st'>"Tomatoes"</span>,
- <span class='st'>"Spring cereals"</span>, <span class='st'>"Winter cereals"</span>)
- <span class='no'>EFSA_GW_interception_2014</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/matrix.html'>matrix</a></span>(<span class='fl'>NA</span>, <span class='fu'><a href='https://rdrr.io/r/base/length.html'>length</a></span>(<span class='no'>crops</span>), <span class='fu'><a href='https://rdrr.io/r/base/length.html'>length</a></span>(<span class='no'>bbch</span>),
- <span class='kw'>dimnames</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span>(<span class='kw'>Crop</span> <span class='kw'>=</span> <span class='no'>crops</span>, <span class='kw'>BBCH</span> <span class='kw'>=</span> <span class='no'>bbch</span>))
- <span class='no'>EFSA_GW_interception_2014</span>[<span class='st'>"Beans (field + vegetable)"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>0</span>, <span class='fl'>0.25</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.4</span>, <span class='fl'>2</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.7</span>, <span class='fl'>5</span>), <span class='fl'>0.8</span>)
- <span class='no'>EFSA_GW_interception_2014</span>[<span class='st'>"Peas"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>0</span>, <span class='fl'>0.35</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.55</span>, <span class='fl'>2</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.85</span>, <span class='fl'>5</span>), <span class='fl'>0.85</span>)
- <span class='no'>EFSA_GW_interception_2014</span>[<span class='st'>"Summer oilseed rape"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>0</span>, <span class='fl'>0.4</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.8</span>, <span class='fl'>2</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.8</span>, <span class='fl'>5</span>), <span class='fl'>0.9</span>)
- <span class='no'>EFSA_GW_interception_2014</span>[<span class='st'>"Winter oilseed rape"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>0</span>, <span class='fl'>0.4</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.8</span>, <span class='fl'>2</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.8</span>, <span class='fl'>5</span>), <span class='fl'>0.9</span>)
- <span class='no'>EFSA_GW_interception_2014</span>[<span class='st'>"Tomatoes"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>0</span>, <span class='fl'>0.5</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.7</span>, <span class='fl'>2</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.8</span>, <span class='fl'>5</span>), <span class='fl'>0.5</span>)
- <span class='no'>EFSA_GW_interception_2014</span>[<span class='st'>"Spring cereals"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>0</span>, <span class='fl'>0</span>, <span class='fl'>0.2</span>, <span class='fl'>0.8</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.9</span>, <span class='fl'>3</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.8</span>, <span class='fl'>2</span>), <span class='fl'>0.8</span>)
- <span class='no'>EFSA_GW_interception_2014</span>[<span class='st'>"Winter cereals"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>0</span>, <span class='fl'>0</span>, <span class='fl'>0.2</span>, <span class='fl'>0.8</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.9</span>, <span class='fl'>3</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.8</span>, <span class='fl'>2</span>), <span class='fl'>0.8</span>)
- <span class='fu'><a href='https://rdrr.io/r/base/save.html'>save</a></span>(<span class='no'>EFSA_GW_interception_2014</span>,
- <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>"../data/EFSA_GW_interception_2014.RData"</span>)
-}
-<span class='no'>EFSA_GW_interception_2014</span></div><div class='output co'>#&gt; BBCH
-#&gt; Crop 0x 1x 2x 3x 4x 5x 6x 7x 8x 9x
-#&gt; Beans (field + vegetable) 0 0.25 0.40 0.40 0.70 0.70 0.70 0.70 0.70 0.80
-#&gt; Peas 0 0.35 0.55 0.55 0.85 0.85 0.85 0.85 0.85 0.85
-#&gt; Summer oilseed rape 0 0.40 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.90
-#&gt; Winter oilseed rape 0 0.40 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.90
-#&gt; Tomatoes 0 0.50 0.70 0.70 0.80 0.80 0.80 0.80 0.80 0.50
-#&gt; Spring cereals 0 0.00 0.20 0.80 0.90 0.90 0.90 0.80 0.80 0.80
-#&gt; Winter cereals 0 0.00 0.20 0.80 0.90 0.90 0.90 0.80 0.80 0.80</div></pre>
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">EFSA_GW_interception_2014</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> BBCH</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Crop 0x 1x 2x 3x 4x 5x 6x 7x 8x 9x</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Beans (field + vegetable) 0 0.25 0.40 0.40 0.70 0.70 0.70 0.70 0.70 0.80</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Peas 0 0.35 0.55 0.55 0.85 0.85 0.85 0.85 0.85 0.85</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Summer oilseed rape 0 0.40 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.90</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Winter oilseed rape 0 0.40 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.90</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Tomatoes 0 0.50 0.70 0.70 0.80 0.80 0.80 0.80 0.80 0.50</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Spring cereals 0 0.00 0.20 0.80 0.90 0.90 0.90 0.80 0.80 0.80</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Winter cereals 0 0.00 0.20 0.80 0.90 0.90 0.90 0.80 0.80 0.80</span>
+</code></pre></div>
+ </div>
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