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| author | Johannes Ranke <jranke@uni-bremen.de> | 2017-05-16 15:43:50 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2017-05-16 15:43:50 +0200 |
| commit | 36036b5901223591e7e21e8b73d8cd1fb034f4cb (patch) | |
| tree | ed8e764778aa2e94b785263d18d7d8e3dfe4e785 /docs/reference/FOCUS_Step_12_scenarios.html | |
| parent | d042f8f06b313e8595087587455daac73d84f17b (diff) | |
Finish the Step 1 calculator including tests
Some cleaning up. PELMO facilities do not currently work at my end,
as I have no working wine installation on this computer
Diffstat (limited to 'docs/reference/FOCUS_Step_12_scenarios.html')
| -rw-r--r-- | docs/reference/FOCUS_Step_12_scenarios.html | 285 |
1 files changed, 285 insertions, 0 deletions
diff --git a/docs/reference/FOCUS_Step_12_scenarios.html b/docs/reference/FOCUS_Step_12_scenarios.html new file mode 100644 index 0000000..37bb2fd --- /dev/null +++ b/docs/reference/FOCUS_Step_12_scenarios.html @@ -0,0 +1,285 @@ +<!-- Generated by pkgdown: do not edit by hand --> +<!DOCTYPE html> +<html> + <head> + <meta charset="utf-8"> +<meta http-equiv="X-UA-Compatible" content="IE=edge"> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> + +<title>Step 1/2 scenario data as distributed with the FOCUS Step 1/2 calculator — FOCUS_Step_12_scenarios • pfm</title> + +<!-- jquery --> +<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script> +<!-- Bootstrap --> + +<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous"> +<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script> + +<!-- Font Awesome icons --> +<link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous"> + + +<!-- pkgdown --> +<link href="../pkgdown.css" rel="stylesheet"> +<script src="../jquery.sticky-kit.min.js"></script> +<script src="../pkgdown.js"></script> + +<!-- mathjax --> +<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> + +<!--[if lt IE 9]> +<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> +<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> +<![endif]--> + + + </head> + + <body> + <div class="container template-reference-topic"> + <header> + <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <div class="container"> + <div class="navbar-header"> + <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar"> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + </button> + <a class="navbar-brand" href="../index.html">pfm</a> + </div> + <div id="navbar" class="navbar-collapse collapse"> + <ul class="nav navbar-nav"> + <li> + <a href="../reference/index.html">Reference</a> +</li> + </ul> + + <ul class="nav navbar-nav navbar-right"> + + </ul> + </div><!--/.nav-collapse --> + </div><!--/.container --> +</div><!--/.navbar --> + + + </header> + + <div class="row"> + <div class="col-md-9 contents"> + <div class="page-header"> + <h1>Step 1/2 scenario data as distributed with the FOCUS Step 1/2 calculator</h1> + </div> + + + <p>The data were extracted from the scenario.txt file using the R code shown below. +The text file is not included in the package as its licence is not clear.</p> + + + + <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2> + + <p>A list containing the scenario names in a character vector called 'names', + the drift percentiles in a matrix called 'drift', interception percentages in + a matrix called 'interception' and the runoff/drainage percentages for Step 2 + calculations in a matrix called 'rd'.</p> + + + <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> + <pre class="examples"><div class='input'> +<span class='fu'>not_run</span>({ + <span class='co'># This is the code that was used to extract the data</span> + <span class='no'>scenario_path</span> <span class='kw'><-</span> <span class='st'>"inst/extdata/FOCUS_Step_12_scenarios.txt"</span> + <span class='no'>scenarios</span> <span class='kw'><-</span> <span class='fu'>readLines</span>(<span class='no'>scenario_path</span>)[<span class='fl'>9</span>:<span class='fl'>38</span>] + <span class='no'>FOCUS_Step_12_scenarios</span> <span class='kw'><-</span> <span class='fu'>list</span>() + <span class='no'>sce</span> <span class='kw'><-</span> <span class='fu'>read.table</span>(<span class='kw'>text</span> <span class='kw'>=</span> <span class='no'>scenarios</span>, <span class='kw'>sep</span> <span class='kw'>=</span> <span class='st'>"\t"</span>, <span class='kw'>header</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>check.names</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, + <span class='kw'>stringsAsFactors</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>) + <span class='no'>FOCUS_Step_12_scenarios</span>$<span class='no'>names</span> <span class='kw'>=</span> <span class='no'>sce</span>$<span class='no'>Crop</span> + <span class='fu'>rownames</span>(<span class='no'>sce</span>) <span class='kw'><-</span> <span class='no'>sce</span>$<span class='no'>Crop</span> + <span class='no'>FOCUS_Step_12_scenarios</span>$<span class='no'>drift</span> <span class='kw'>=</span> <span class='no'>sce</span>[, <span class='fl'>3</span>:<span class='fl'>11</span>] + <span class='no'>FOCUS_Step_12_scenarios</span>$<span class='no'>interception</span> <span class='kw'>=</span> <span class='no'>sce</span>[, <span class='fl'>12</span>:<span class='fl'>15</span>] + <span class='no'>sce_2</span> <span class='kw'><-</span> <span class='fu'>readLines</span>(<span class='no'>scenario_path</span>)[<span class='fl'>41</span>:<span class='fl'>46</span>] + <span class='no'>rd</span> <span class='kw'><-</span> <span class='fu'>read.table</span>(<span class='kw'>text</span> <span class='kw'>=</span> <span class='no'>sce_2</span>, <span class='kw'>sep</span> <span class='kw'>=</span> <span class='st'>"\t"</span>)[<span class='fl'>1</span>:<span class='fl'>2</span>] + <span class='no'>rd_mat</span> <span class='kw'><-</span> <span class='fu'>matrix</span>(<span class='no'>rd</span>$<span class='no'>V2</span>, <span class='kw'>nrow</span> <span class='kw'>=</span> <span class='fl'>3</span>, <span class='kw'>byrow</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>) + <span class='fu'>dimnames</span>(<span class='no'>rd_mat</span>) <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>Time</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"Oct-Feb"</span>, <span class='st'>"Mar-May"</span>, <span class='st'>"Jun-Sep"</span>), + <span class='kw'>Region</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"North"</span>, <span class='st'>"South"</span>)) + <span class='no'>FOCUS_Step_12_scenarios</span>$<span class='no'>rd</span> <span class='kw'>=</span> <span class='no'>rd_mat</span> + <span class='fu'>save</span>(<span class='no'>FOCUS_Step_12_scenarios</span>, <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>"data/FOCUS_Step_12_scenarios.RData"</span>) +}) + +<span class='co'># And this is the resulting data</span> +<span class='no'>FOCUS_Step_12_scenarios</span></div><div class='output co'>#> $names +#> [1] "cereals, spring" "cereals, winter" +#> [3] "citrus" "cotton" +#> [5] "field beans" "grass / alfalfa" +#> [7] "hops" "legumes" +#> [9] "maize" "oil seed rape, spring" +#> [11] "oil seed rape, winter" "olives" +#> [13] "pome / stone fruit, early applns" "pome / stone fruit, late applns" +#> [15] "potatoes" "soybeans" +#> [17] "sugar beets" "sunflowers" +#> [19] "tobacco" "vegetables, bulb" +#> [21] "vegetables, fruiting" "vegetables, leafy" +#> [23] "vegetables, root" "vines, early applns" +#> [25] "vines, late applns" "appln, aerial" +#> [27] "appln, hand (crop < 50 cm)" "appln, hand (crop > 50 cm)" +#> [29] "no drift (incorp or seed trtmt)" +#> +#> $drift +#> 1 2 3 4 5 6 +#> cereals, spring 2.759 2.438 2.024 1.862 1.794 1.631 +#> cereals, winter 2.759 2.438 2.024 1.862 1.794 1.631 +#> citrus 15.725 12.129 11.011 10.124 9.743 9.204 +#> cotton 2.759 2.438 2.024 1.862 1.794 1.631 +#> field beans 2.759 2.438 2.024 1.862 1.794 1.631 +#> grass / alfalfa 2.759 2.438 2.024 1.862 1.794 1.631 +#> hops 19.326 17.723 15.928 15.378 15.114 14.902 +#> legumes 2.759 2.438 2.024 1.862 1.794 1.631 +#> maize 2.759 2.438 2.024 1.862 1.794 1.631 +#> oil seed rape, spring 2.759 2.438 2.024 1.862 1.794 1.631 +#> oil seed rape, winter 2.759 2.438 2.024 1.862 1.794 1.631 +#> olives 15.725 12.129 11.011 10.124 9.743 9.204 +#> pome / stone fruit, early applns 29.197 25.531 23.960 23.603 23.116 22.760 +#> pome / stone fruit, late applns 15.725 12.129 11.011 10.124 9.743 9.204 +#> potatoes 2.759 2.438 2.024 1.862 1.794 1.631 +#> soybeans 2.759 2.438 2.024 1.862 1.794 1.631 +#> sugar beets 2.759 2.438 2.024 1.862 1.794 1.631 +#> sunflowers 2.759 2.438 2.024 1.862 1.794 1.631 +#> tobacco 2.759 2.438 2.024 1.862 1.794 1.631 +#> vegetables, bulb 2.759 2.438 2.024 1.862 1.794 1.631 +#> vegetables, fruiting 2.759 2.438 2.024 1.862 1.794 1.631 +#> vegetables, leafy 2.759 2.438 2.024 1.862 1.794 1.631 +#> vegetables, root 2.759 2.438 2.024 1.862 1.794 1.631 +#> vines, early applns 2.699 2.496 2.546 2.499 2.398 2.336 +#> vines, late applns 8.028 7.119 6.898 6.631 6.636 6.431 +#> appln, aerial 33.200 33.200 33.200 33.200 33.200 33.200 +#> appln, hand (crop < 50 cm) 2.759 2.438 2.024 1.862 1.794 1.631 +#> appln, hand (crop > 50 cm) 8.028 7.119 6.898 6.631 6.636 6.431 +#> no drift (incorp or seed trtmt) 0.000 0.000 0.000 0.000 0.000 0.000 +#> 7 8 >8 +#> cereals, spring 1.578 1.512 1.512 +#> cereals, winter 1.578 1.512 1.512 +#> citrus 9.102 8.656 8.656 +#> cotton 1.578 1.512 1.512 +#> field beans 1.578 1.512 1.512 +#> grass / alfalfa 1.578 1.512 1.512 +#> hops 14.628 13.520 13.520 +#> legumes 1.578 1.512 1.512 +#> maize 1.578 1.512 1.512 +#> oil seed rape, spring 1.578 1.512 1.512 +#> oil seed rape, winter 1.578 1.512 1.512 +#> olives 9.102 8.656 8.656 +#> pome / stone fruit, early applns 22.690 22.241 22.241 +#> pome / stone fruit, late applns 9.102 8.656 8.656 +#> potatoes 1.578 1.512 1.512 +#> soybeans 1.578 1.512 1.512 +#> sugar beets 1.578 1.512 1.512 +#> sunflowers 1.578 1.512 1.512 +#> tobacco 1.578 1.512 1.512 +#> vegetables, bulb 1.578 1.512 1.512 +#> vegetables, fruiting 1.578 1.512 1.512 +#> vegetables, leafy 1.578 1.512 1.512 +#> vegetables, root 1.578 1.512 1.512 +#> vines, early applns 2.283 2.265 2.265 +#> vines, late applns 6.227 6.173 6.173 +#> appln, aerial 33.200 33.200 33.200 +#> appln, hand (crop < 50 cm) 1.578 1.512 1.512 +#> appln, hand (crop > 50 cm) 6.227 6.173 6.173 +#> no drift (incorp or seed trtmt) 0.000 0.000 0.000 +#> +#> $interception +#> no interception minimal crop cover +#> cereals, spring 0 0.00 +#> cereals, winter 0 0.00 +#> citrus 0 0.80 +#> cotton 0 0.30 +#> field beans 0 0.25 +#> grass / alfalfa 0 0.40 +#> hops 0 0.20 +#> legumes 0 0.25 +#> maize 0 0.25 +#> oil seed rape, spring 0 0.40 +#> oil seed rape, winter 0 0.40 +#> olives 0 0.70 +#> pome / stone fruit, early applns 0 0.20 +#> pome / stone fruit, late applns 0 0.20 +#> potatoes 0 0.15 +#> soybeans 0 0.20 +#> sugar beets 0 0.20 +#> sunflowers 0 0.20 +#> tobacco 0 0.20 +#> vegetables, bulb 0 0.10 +#> vegetables, fruiting 0 0.25 +#> vegetables, leafy 0 0.25 +#> vegetables, root 0 0.25 +#> vines, early applns 0 0.40 +#> vines, late applns 0 0.40 +#> appln, aerial 0 0.20 +#> appln, hand (crop < 50 cm) 0 0.20 +#> appln, hand (crop > 50 cm) 0 0.20 +#> no drift (incorp or seed trtmt) 0 0.00 +#> average crop cover full canopy +#> cereals, spring 0.20 0.70 +#> cereals, winter 0.20 0.70 +#> citrus 0.80 0.80 +#> cotton 0.60 0.75 +#> field beans 0.40 0.70 +#> grass / alfalfa 0.60 0.75 +#> hops 0.50 0.70 +#> legumes 0.50 0.70 +#> maize 0.50 0.75 +#> oil seed rape, spring 0.70 0.75 +#> oil seed rape, winter 0.70 0.75 +#> olives 0.70 0.70 +#> pome / stone fruit, early applns 0.40 0.65 +#> pome / stone fruit, late applns 0.40 0.65 +#> potatoes 0.50 0.70 +#> soybeans 0.50 0.75 +#> sugar beets 0.70 0.75 +#> sunflowers 0.50 0.75 +#> tobacco 0.70 0.75 +#> vegetables, bulb 0.25 0.40 +#> vegetables, fruiting 0.50 0.70 +#> vegetables, leafy 0.40 0.70 +#> vegetables, root 0.50 0.70 +#> vines, early applns 0.50 0.60 +#> vines, late applns 0.50 0.60 +#> appln, aerial 0.50 0.70 +#> appln, hand (crop < 50 cm) 0.50 0.70 +#> appln, hand (crop > 50 cm) 0.50 0.70 +#> no drift (incorp or seed trtmt) 0.00 0.00 +#> +#> $rd +#> Region +#> Time North South +#> Oct-Feb 5 4 +#> Mar-May 2 4 +#> Jun-Sep 2 3 +#> </div></pre> + </div> + <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> + <h2>Contents</h2> + <ul class="nav nav-pills nav-stacked"> + + <li><a href="#format">Format</a></li> + + <li><a href="#examples">Examples</a></li> + </ul> + + </div> +</div> + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> +</div> + 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