Merge branch 'main' into crop_group

author: Johannes Ranke <jranke@uni-bremen.de> 2024-08-26 17:11:43 +0200
committer: Johannes Ranke <jranke@uni-bremen.de> 2024-08-26 17:11:43 +0200
commit: 913c383880da2a5f4bdb71c8a82107afbad6ef13 (patch)
tree: 1c5a988748fc49fde4c279a96650deb26039b711 /docs/reference/GUS.html
parent: 9e62ed638e530a5cebebf491de055caca49a56ef (diff)
parent: 396ba6c42252426a132be56b9f417786a1f276e3 (diff)
1 files changed, 39 insertions, 48 deletions
diff --git a/docs/reference/GUS.html b/docs/reference/GUS.html
index 7638dcd..a613d98 100644
--- a/docs/reference/GUS.html
+++ b/docs/reference/GUS.html
@@ -1,47 +1,38 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="The groundwater ubiquity score GUS is calculated according to
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Groundwater ubiquity score based on Gustafson (1989) — GUS • pfm</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Groundwater ubiquity score based on Gustafson (1989) — GUS"><meta name="description" content="The groundwater ubiquity score GUS is calculated according to
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+$$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$"><meta property="og:description" content="The groundwater ubiquity score GUS is calculated according to
 the following equation
-$$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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-<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
-<![endif]--></head><body>
+$$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$"></head><body>
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+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.6.3</small>
+
 
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 </nav><div class="container template-reference-topic">
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   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="" class="logo" alt=""><h1>Groundwater ubiquity score based on Gustafson (1989)</h1>
+
+      <h1>Groundwater ubiquity score based on Gustafson (1989)</h1>
       <small class="dont-index">Source: <a href="https://github.com/jranke/pfm/blob/HEAD/R/GUS.R" class="external-link"><code>R/GUS.R</code></a></small>
       <div class="d-none name"><code>GUS.Rd</code></div>
     </div>
@@ -56,10 +47,10 @@ $$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$</p>
     <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
     <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">GUS</span><span class="op">(</span><span class="va">...</span><span class="op">)</span></span>
 <span></span>
-<span><span class="co"># S3 method for numeric</span></span>
+<span><span class="co"># S3 method for class 'numeric'</span></span>
 <span><span class="fu">GUS</span><span class="op">(</span><span class="va">DT50</span>, <span class="va">Koc</span>, <span class="va">...</span><span class="op">)</span></span>
 <span></span>
-<span><span class="co"># S3 method for chent</span></span>
+<span><span class="co"># S3 method for class 'chent'</span></span>
 <span><span class="fu">GUS</span><span class="op">(</span></span>
 <span>  <span class="va">chent</span>,</span>
 <span>  degradation_value <span class="op">=</span> <span class="st">"DT50ref"</span>,</span>
@@ -71,18 +62,20 @@ $$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$</p>
 <span>  <span class="va">...</span></span>
 <span><span class="op">)</span></span>
 <span></span>
-<span><span class="co"># S3 method for GUS_result</span></span>
+<span><span class="co"># S3 method for class 'GUS_result'</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span>, digits <span class="op">=</span> <span class="fl">1</span><span class="op">)</span></span></code></pre></div>
     </div>
 
     <div class="section level2">
     <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
-    <dl><dt>...</dt>
+
+
+<dl><dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
 <dd><p>Included in the generic to allow for further arguments later. Therefore
 this also had to be added to the specific methods.</p></dd>
 
 
-<dt>DT50</dt>
+<dt id="arg-dt-">DT50<a class="anchor" aria-label="anchor" href="#arg-dt-"></a></dt>
 <dd><p>Half-life of the chemical in soil. Should be a field
 half-life according to Gustafson (1989). However, leaching to the sub-soil
 can not completely be excluded in field dissipation experiments and Gustafson
@@ -90,7 +83,7 @@ did not refer to any normalisation procedure, but says the field study should
 be conducted under use conditions.</p></dd>
 
 
-<dt>Koc</dt>
+<dt id="arg-koc">Koc<a class="anchor" aria-label="anchor" href="#arg-koc"></a></dt>
 <dd><p>The sorption constant normalised to organic carbon. Gustafson
 does not mention the nonlinearity of the sorption constant commonly
 found and usually described by Freundlich sorption, therefore it is
@@ -98,17 +91,17 @@ unclear at which reference concentration the Koc should be observed
 (and if the reference concentration would be in soil or in porewater).</p></dd>
 
 
-<dt>chent</dt>
+<dt id="arg-chent">chent<a class="anchor" aria-label="anchor" href="#arg-chent"></a></dt>
 <dd><p>If a chent is given with appropriate information present in its
 chyaml field, this information is used, with defaults specified below.</p></dd>
 
 
-<dt>degradation_value</dt>
+<dt id="arg-degradation-value">degradation_value<a class="anchor" aria-label="anchor" href="#arg-degradation-value"></a></dt>
 <dd><p>Which of the available degradation values should
 be used?</p></dd>
 
 
-<dt>lab_field</dt>
+<dt id="arg-lab-field">lab_field<a class="anchor" aria-label="anchor" href="#arg-lab-field"></a></dt>
 <dd><p>Should laboratory or field half-lives be used? This
 defaults to lab in this implementation, in order to avoid
 double-accounting for mobility. If comparability with the original GUS
@@ -116,11 +109,11 @@ values given by Gustafson (1989) is desired, non-normalised first-order
 field half-lives obtained under actual use conditions should be used.</p></dd>
 
 
-<dt>redox</dt>
+<dt id="arg-redox">redox<a class="anchor" aria-label="anchor" href="#arg-redox"></a></dt>
 <dd><p>Aerobic or anaerobic degradation data</p></dd>
 
 
-<dt>sorption_value</dt>
+<dt id="arg-sorption-value">sorption_value<a class="anchor" aria-label="anchor" href="#arg-sorption-value"></a></dt>
 <dd><p>Which of the available sorption values should be used?
 Defaults to Kfoc as this is what is generally available from the European
 pesticide peer review process. These values generally use a reference
@@ -128,27 +121,25 @@ concentration of 1 mg/L in porewater, that means they would be expected to
 be Koc values at a concentration of 1 mg/L in the water phase.</p></dd>
 
 
-<dt>degradation_aggregator</dt>
+<dt id="arg-degradation-aggregator">degradation_aggregator<a class="anchor" aria-label="anchor" href="#arg-degradation-aggregator"></a></dt>
 <dd><p>Function for aggregating half-lives</p></dd>
 
 
-<dt>sorption_aggregator</dt>
+<dt id="arg-sorption-aggregator">sorption_aggregator<a class="anchor" aria-label="anchor" href="#arg-sorption-aggregator"></a></dt>
 <dd><p>Function for aggregation Koc values</p></dd>
 
 
-<dt>x</dt>
+<dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
 <dd><p>An object of class GUS_result to be printed</p></dd>
 
 
-<dt>digits</dt>
+<dt id="arg-digits">digits<a class="anchor" aria-label="anchor" href="#arg-digits"></a></dt>
 <dd><p>The number of digits used in the print method</p></dd>
 
 </dl></div>
     <div class="section level2">
     <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
-    
-
-<p>A list with the DT50 and Koc used as well as the resulting score
+    <p>A list with the DT50 and Koc used as well as the resulting score
 of class GUS_result</p>
     </div>
     <div class="section level2">
@@ -162,23 +153,23 @@ toxicology and chemistry</em> <b>8</b>(4) 339–57.</p>
     <p>Johannes Ranke</p>
     </div>
 
-  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
     </nav></aside></div>
 
 
     <footer><div class="pkgdown-footer-left">
-  <p></p><p>Developed by Johannes Ranke.</p>
+  <p>Developed by Johannes Ranke.</p>
 </div>
 
 <div class="pkgdown-footer-right">
-  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
 </div>
 
     </footer></div>
 
-  
 
-  
+
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author	Johannes Ranke <jranke@uni-bremen.de>	2024-08-26 17:11:43 +0200
committer	Johannes Ranke <jranke@uni-bremen.de>	2024-08-26 17:11:43 +0200
commit	913c383880da2a5f4bdb71c8a82107afbad6ef13 (patch)
tree	1c5a988748fc49fde4c279a96650deb26039b711 /docs/reference/GUS.html
parent	9e62ed638e530a5cebebf491de055caca49a56ef (diff)
parent	396ba6c42252426a132be56b9f417786a1f276e3 (diff)