Rebuild docs with pkgdown 1.1.0

1 files changed, 30 insertions, 7 deletions

diff --git a/docs/reference/PEC_soil.html b/docs/reference/PEC_soil.html
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 <meta property="og:title" content="Calculate predicted environmental concentrations in soil — PEC_soil" />
 
 <meta property="og:description" content="This is a basic calculation of a contaminant concentration in bulk soil
@@ -34,6 +37,9 @@ based on complete, instantaneous mixing. If an interval is given, an
 attempt is made at calculating a long term maximum concentration using
 the concepts layed out for example in the PPR panel opinion (EFSA 2012)." />
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@@ -56,8 +62,12 @@ the concepts layed out for example in the PPR panel opinion (EFSA 2012)." />
         <span class="icon-bar"></span>
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       </button>
-      <a class="navbar-brand" href="../index.html">pfm</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">pfm</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span>
+      </span>
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+
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@@ -72,8 +82,14 @@ the concepts layed out for example in the PPR panel opinion (EFSA 2012)." />
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+        <li>
+  <a href="https://github.com/jranke/pfm">
+    <span class="fa fa-github fa-lg"></span>
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+      
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@@ -81,18 +97,22 @@ the concepts layed out for example in the PPR panel opinion (EFSA 2012)." />
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Calculate predicted environmental concentrations in soil</h1>
+    <small class="dont-index">Source: <a href='https://github.com/jranke/pfm/blob/master/R/PEC_soil.R'><code>R/PEC_soil.R</code></a></small>
+    <div class="hidden name"><code>PEC_soil.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>This is a basic calculation of a contaminant concentration in bulk soil
 based on complete, instantaneous mixing. If an interval is given, an 
 attempt is made at calculating a long term maximum concentration using
 the concepts layed out for example in the PPR panel opinion (EFSA 2012).</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>PEC_soil</span>(<span class='no'>rate</span>, <span class='kw'>rate_units</span> <span class='kw'>=</span> <span class='st'>"g/ha"</span>, <span class='kw'>interception</span> <span class='kw'>=</span> <span class='fl'>0</span>, <span class='kw'>mixing_depth</span> <span class='kw'>=</span> <span class='fl'>5</span>,
   <span class='kw'>PEC_units</span> <span class='kw'>=</span> <span class='st'>"mg/kg"</span>, <span class='kw'>PEC_pw_units</span> <span class='kw'>=</span> <span class='st'>"mg/L"</span>, <span class='kw'>interval</span> <span class='kw'>=</span> <span class='fl'>NA</span>,
@@ -100,7 +120,7 @@ the concepts layed out for example in the PPR panel opinion (EFSA 2012).</p>
   <span class='kw'>Koc</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>Kom</span> <span class='kw'>=</span> <span class='no'>Koc</span>/<span class='fl'>1.724</span>, <span class='kw'>t_avg</span> <span class='kw'>=</span> <span class='fl'>0</span>, <span class='kw'>scenarios</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"default"</span>,
   <span class='st'>"EFSA_2015"</span>), <span class='kw'>porewater</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</pre>
     
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
@@ -276,5 +296,8 @@ Johannes Ranke
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