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| author | Ranke Johannes <johannes.ranke@agroscope.admin.ch> | 2024-01-31 13:16:17 +0100 |
|---|---|---|
| committer | Ranke Johannes <johannes.ranke@agroscope.admin.ch> | 2024-01-31 13:27:50 +0100 |
| commit | aed160d7f0eaf5865e2bd9bf6c4b1c9d7b13d911 (patch) | |
| tree | 7ca136834857c12449f50a1e086a589cc9b79e2e /docs/reference/PEC_sw_drift.html | |
| parent | 64f629efbe666bae56f48a309adf33d1eb09c358 (diff) | |
Reorganise data generation
- Use inst/data_generation for R code generating data as in some of my other packages
- data/*.RData files were checked using https://github.com/jranke/dotfiles/blob/main/bin/rda_diff
contents were not changed
- Remove ChangeLog, the history is in the git logs
- Update docs and some links contained therein
- use \doi{} markup
- Move logs to log directory
Diffstat (limited to 'docs/reference/PEC_sw_drift.html')
| -rw-r--r-- | docs/reference/PEC_sw_drift.html | 271 |
1 files changed, 107 insertions, 164 deletions
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- - - -<!-- mathjax --> -<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script> -<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script> - -<!--[if lt IE 9]> +with input via spray drift."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> -<![endif]--> - - - - </head> +<![endif]--></head><body data-spy="scroll" data-target="#toc"> + - <body data-spy="scroll" data-target="#toc"> <div class="container template-reference-topic"> - <header> - <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <header><div class="navbar navbar-default navbar-fixed-top" role="navigation"> <div class="container"> <div class="navbar-header"> <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false"> @@ -74,35 +19,21 @@ with input via spray drift." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.8</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.6.1</span> </span> </div> <div id="navbar" class="navbar-collapse collapse"> - <ul class="nav navbar-nav"> - <li> - <a href="../index.html"> - <span class="fas fa fas fa-home fa-lg"></span> - - </a> -</li> -<li> + <ul class="nav navbar-nav"><li> <a href="../reference/index.html">Reference</a> </li> - </ul> - <ul class="nav navbar-nav navbar-right"> - - </ul> - - </div><!--/.nav-collapse --> + </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse --> </div><!--/.container --> </div><!--/.navbar --> - </header> - -<div class="row"> + </header><div class="row"> <div class="col-md-9 contents"> <div class="page-header"> <h1>Calculate predicted environmental concentrations in surface water due to drift</h1> @@ -116,106 +47,118 @@ concentration in surface water based on complete, instantaneous mixing with input via spray drift.</p> </div> - <pre class="usage"><span class='fu'>PEC_sw_drift</span>( - <span class='no'>rate</span>, - <span class='kw'>applications</span> <span class='kw'>=</span> <span class='fl'>1</span>, - <span class='kw'>water_depth</span> <span class='kw'>=</span> <span class='fl'>30</span>, - <span class='kw'>drift_percentages</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, - <span class='kw'>drift_data</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"JKI"</span>, <span class='st'>"RF"</span>), - <span class='kw'>crop</span> <span class='kw'>=</span> <span class='st'>"Ackerbau"</span>, - <span class='kw'>distances</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>1</span>, <span class='fl'>5</span>, <span class='fl'>10</span>, <span class='fl'>20</span>), - <span class='kw'>rate_units</span> <span class='kw'>=</span> <span class='st'>"g/ha"</span>, - <span class='kw'>PEC_units</span> <span class='kw'>=</span> <span class='st'>"µg/L"</span> -)</pre> - - <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2> - <table class="ref-arguments"> - <colgroup><col class="name" /><col class="desc" /></colgroup> - <tr> - <th>rate</th> - <td><p>Application rate in units specified below</p></td> - </tr> - <tr> - <th>applications</th> - <td><p>Number of applications for selection of drift percentile</p></td> - </tr> - <tr> - <th>water_depth</th> - <td><p>Depth of the water body in cm</p></td> - </tr> - <tr> - <th>drift_percentages</th> - <td><p>Percentage drift values for which to calculate PECsw. -'drift_data' and 'distances' if not NULL.</p></td> - </tr> - <tr> - <th>drift_data</th> - <td><p>Source of drift percentage data. If 'JKI', the [drift_data_JKI] + <div id="ref-usage"> + <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">PEC_sw_drift</span><span class="op">(</span></span> +<span> <span class="va">rate</span>,</span> +<span> applications <span class="op">=</span> <span class="fl">1</span>,</span> +<span> water_depth <span class="op">=</span> <span class="fl">30</span>,</span> +<span> drift_percentages <span class="op">=</span> <span class="cn">NULL</span>,</span> +<span> drift_data <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"JKI"</span>, <span class="st">"RF"</span><span class="op">)</span>,</span> +<span> crop <span class="op">=</span> <span class="st">"Ackerbau"</span>,</span> +<span> distances <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">5</span>, <span class="fl">10</span>, <span class="fl">20</span><span class="op">)</span>,</span> +<span> rate_units <span class="op">=</span> <span class="st">"g/ha"</span>,</span> +<span> PEC_units <span class="op">=</span> <span class="st">"µg/L"</span></span> +<span><span class="op">)</span></span></code></pre></div> + </div> + + <div id="arguments"> + <h2>Arguments</h2> + <dl><dt>rate</dt> +<dd><p>Application rate in units specified below</p></dd> + + +<dt>applications</dt> +<dd><p>Number of applications for selection of drift percentile</p></dd> + + +<dt>water_depth</dt> +<dd><p>Depth of the water body in cm</p></dd> + + +<dt>drift_percentages</dt> +<dd><p>Percentage drift values for which to calculate PECsw. +'drift_data' and 'distances' if not NULL.</p></dd> + + +<dt>drift_data</dt> +<dd><p>Source of drift percentage data. If 'JKI', the [drift_data_JKI] included in the package is used. If 'RF', the Rautmann formula is used, if -implemented for the crop type and number of applications</p></td> - </tr> - <tr> - <th>crop</th> - <td><p>Crop name (use German names for JKI data), defaults to "Ackerbau"</p></td> - </tr> - <tr> - <th>distances</th> - <td><p>The distances in m for which to get PEC values</p></td> - </tr> - <tr> - <th>rate_units</th> - <td><p>Defaults to g/ha</p></td> - </tr> - <tr> - <th>PEC_units</th> - <td><p>Requested units for the calculated PEC. Only µg/L currently supported</p></td> - </tr> - </table> - - <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2> - - <p>The predicted concentration in surface water</p> - - <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> - <pre class="examples"><div class='input'><span class='fu'>PEC_sw_drift</span>(<span class='fl'>100</span>)</div><div class='output co'>#> 1 m 5 m 10 m 20 m -#> 0.92333333 0.19000000 0.09666667 0.05000000 </div><div class='input'><span class='co'># Alternatively, we can use the formula for a single application to "Ackerbau" from the paper</span> -<span class='fu'>PEC_sw_drift</span>(<span class='fl'>100</span>, <span class='kw'>drift_data</span> <span class='kw'>=</span> <span class='st'>"RF"</span>)</div><div class='output co'>#> 1 m 5 m 10 m 20 m -#> 0.92350000 0.19114149 0.09699222 0.04921742 </div><div class='input'> -<span class='co'># This makes it possible to also use different substances</span> -<span class='fu'>PEC_sw_drift</span>(<span class='fl'>100</span>, <span class='kw'>distances</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>1</span>, <span class='fl'>3</span>, <span class='fl'>5</span>, <span class='fl'>6</span>, <span class='fl'>10</span>, <span class='fl'>20</span>, <span class='fl'>50</span>, <span class='fl'>100</span>), <span class='kw'>drift_data</span> <span class='kw'>=</span> <span class='st'>"RF"</span>)</div><div class='output co'>#> 1 m 3 m 5 m 6 m 10 m 20 m 50 m -#> 0.92350000 0.31512171 0.19114149 0.15990435 0.09699222 0.04921742 0.02007497 -#> 100 m -#> 0.01018678 </div><div class='input'> -<span class='co'># Using custom drift percentages is also supported</span> -<span class='fu'>PEC_sw_drift</span>(<span class='fl'>100</span>, <span class='kw'>drift_percentages</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>2.77</span>, <span class='fl'>0.95</span>, <span class='fl'>0.57</span>, <span class='fl'>0.48</span>, <span class='fl'>0.29</span>, <span class='fl'>0.15</span>, <span class='fl'>0.06</span>, <span class='fl'>0.03</span>))</div><div class='output co'>#> 2.77 % 0.95 % 0.57 % 0.48 % 0.29 % 0.15 % 0.06 % -#> 0.92333333 0.31666667 0.19000000 0.16000000 0.09666667 0.05000000 0.02000000 -#> 0.03 % -#> 0.01000000 </div></pre> +implemented for the crop type and number of applications</p></dd> + + +<dt>crop</dt> +<dd><p>Crop name (use German names for JKI data), defaults to "Ackerbau"</p></dd> + + +<dt>distances</dt> +<dd><p>The distances in m for which to get PEC values</p></dd> + + +<dt>rate_units</dt> +<dd><p>Defaults to g/ha</p></dd> + + +<dt>PEC_units</dt> +<dd><p>Requested units for the calculated PEC. Only µg/L currently supported</p></dd> + +</dl></div> + <div id="value"> + <h2>Value</h2> + + +<p>The predicted concentration in surface water</p> + </div> + <div id="author"> + <h2>Author</h2> + <p>Johannes Ranke</p> + </div> + + <div id="ref-examples"> + <h2>Examples</h2> + <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">PEC_sw_drift</span><span class="op">(</span><span class="fl">100</span><span class="op">)</span></span></span> +<span class="r-out co"><span class="r-pr">#></span> 1 m 5 m 10 m 20 m </span> +<span class="r-out co"><span class="r-pr">#></span> 0.92333333 0.19000000 0.09666667 0.05000000 </span> +<span class="r-in"><span><span class="co"># Alternatively, we can use the formula for a single application to "Ackerbau" from the paper</span></span></span> +<span class="r-in"><span><span class="fu">PEC_sw_drift</span><span class="op">(</span><span class="fl">100</span>, drift_data <span class="op">=</span> <span class="st">"RF"</span><span class="op">)</span></span></span> +<span class="r-out co"><span class="r-pr">#></span> 1 m 5 m 10 m 20 m </span> +<span class="r-out co"><span class="r-pr">#></span> 0.92350000 0.19114149 0.09699222 0.04921742 </span> +<span class="r-in"><span></span></span> +<span class="r-in"><span><span class="co"># This makes it possible to also use different substances</span></span></span> +<span class="r-in"><span><span class="fu">PEC_sw_drift</span><span class="op">(</span><span class="fl">100</span>, distances <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">3</span>, <span class="fl">5</span>, <span class="fl">6</span>, <span class="fl">10</span>, <span class="fl">20</span>, <span class="fl">50</span>, <span class="fl">100</span><span class="op">)</span>, drift_data <span class="op">=</span> <span class="st">"RF"</span><span class="op">)</span></span></span> +<span class="r-out co"><span class="r-pr">#></span> 1 m 3 m 5 m 6 m 10 m 20 m 50 m </span> +<span class="r-out co"><span class="r-pr">#></span> 0.92350000 0.31512171 0.19114149 0.15990435 0.09699222 0.04921742 0.02007497 </span> +<span class="r-out co"><span class="r-pr">#></span> 100 m </span> +<span class="r-out co"><span class="r-pr">#></span> 0.01018678 </span> +<span class="r-in"><span></span></span> +<span class="r-in"><span><span class="co"># Using custom drift percentages is also supported</span></span></span> +<span class="r-in"><span><span class="fu">PEC_sw_drift</span><span class="op">(</span><span class="fl">100</span>, drift_percentages <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">2.77</span>, <span class="fl">0.95</span>, <span class="fl">0.57</span>, <span class="fl">0.48</span>, <span class="fl">0.29</span>, <span class="fl">0.15</span>, <span class="fl">0.06</span>, <span class="fl">0.03</span><span class="op">)</span><span class="op">)</span></span></span> +<span class="r-out co"><span class="r-pr">#></span> 2.77 % 0.95 % 0.57 % 0.48 % 0.29 % 0.15 % 0.06 % </span> +<span class="r-out co"><span class="r-pr">#></span> 0.92333333 0.31666667 0.19000000 0.16000000 0.09666667 0.05000000 0.02000000 </span> +<span class="r-out co"><span class="r-pr">#></span> 0.03 % </span> +<span class="r-out co"><span class="r-pr">#></span> 0.01000000 </span> +</code></pre></div> + </div> </div> <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> - <nav id="toc" data-toggle="toc" class="sticky-top"> - <h2 data-toc-skip>Contents</h2> - </nav> - </div> + <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2> + </nav></div> </div> - <footer> - <div class="copyright"> - <p>Developed by Johannes Ranke.</p> + <footer><div class="copyright"> + <p></p><p>Developed by Johannes Ranke.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p> + <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p> </div> - </footer> - </div> + </footer></div> - </body> -</html> + + </body></html> |