Support units in drift, runoff und sediment PECs

author: Ranke Johannes <johannes.ranke@agroscope.admin.ch> 2024-08-13 10:58:16 +0200
committer: Ranke Johannes <johannes.ranke@agroscope.admin.ch> 2024-08-13 11:00:17 +0200
commit: 396ba6c42252426a132be56b9f417786a1f276e3 (patch)
tree: dacbad92ab168e0dfc1b70c6f8c7a3af29243d96 /docs/reference/PEC_sw_focus.html
parent: 870c7f6315e2656fceea28449bdeb5b2a57adf10 (diff)
1 files changed, 39 insertions, 46 deletions
diff --git a/docs/reference/PEC_sw_focus.html b/docs/reference/PEC_sw_focus.html
index d9d06de..d91d957 100644
--- a/docs/reference/PEC_sw_focus.html
+++ b/docs/reference/PEC_sw_focus.html
@@ -1,55 +1,46 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="This is a reimplementation of the FOCUS Step 1 and 2 calculator version 3.2,
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Calculate PEC surface water at FOCUS Step 1 — PEC_sw_focus • pfm</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Calculate PEC surface water at FOCUS Step 1 — PEC_sw_focus"><meta name="description" content="This is a reimplementation of the FOCUS Step 1 and 2 calculator version 3.2,
 authored by Michael Klein, in R. Note that results for multiple
 applications should be compared to the corresponding results for a
 single application. At current, this is not done automatically in
 this implementation. Only Step 1 PECs are calculated. However,
 input files can be generated that are suitable as input for
-the FOCUS calculator."><title>Calculate PEC surface water at FOCUS Step 1 — PEC_sw_focus • pfm</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Calculate PEC surface water at FOCUS Step 1 — PEC_sw_focus"><meta property="og:description" content="This is a reimplementation of the FOCUS Step 1 and 2 calculator version 3.2,
+the FOCUS calculator."><meta property="og:description" content="This is a reimplementation of the FOCUS Step 1 and 2 calculator version 3.2,
 authored by Michael Klein, in R. Note that results for multiple
 applications should be compared to the corresponding results for a
 single application. At current, this is not done automatically in
 this implementation. Only Step 1 PECs are calculated. However,
 input files can be generated that are suitable as input for
-the FOCUS calculator."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="" class="logo" alt=""><h1>Calculate PEC surface water at FOCUS Step 1</h1>
+
+      <h1>Calculate PEC surface water at FOCUS Step 1</h1>
       <small class="dont-index">Source: <a href="https://github.com/jranke/pfm/blob/HEAD/R/PEC_sw_focus.R" class="external-link"><code>R/PEC_sw_focus.R</code></a></small>
       <div class="d-none name"><code>PEC_sw_focus.Rd</code></div>
     </div>
@@ -89,85 +80,87 @@ the FOCUS calculator.</p>
 
     <div class="section level2">
     <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
-    <dl><dt>parent</dt>
+
+
+<dl><dt id="arg-parent">parent<a class="anchor" aria-label="anchor" href="#arg-parent"></a></dt>
 <dd><p>A list containing substance specific parameters, e.g.
 conveniently generated by <a href="chent_focus_sw.html">chent_focus_sw</a>.</p></dd>
 
 
-<dt>rate</dt>
+<dt id="arg-rate">rate<a class="anchor" aria-label="anchor" href="#arg-rate"></a></dt>
 <dd><p>The application rate in g/ha. Overriden when
 applications are given explicitly</p></dd>
 
 
-<dt>n</dt>
+<dt id="arg-n">n<a class="anchor" aria-label="anchor" href="#arg-n"></a></dt>
 <dd><p>The number of applications</p></dd>
 
 
-<dt>i</dt>
+<dt id="arg-i">i<a class="anchor" aria-label="anchor" href="#arg-i"></a></dt>
 <dd><p>The application interval</p></dd>
 
 
-<dt>comment</dt>
+<dt id="arg-comment">comment<a class="anchor" aria-label="anchor" href="#arg-comment"></a></dt>
 <dd><p>A comment for the input file</p></dd>
 
 
-<dt>met</dt>
+<dt id="arg-met">met<a class="anchor" aria-label="anchor" href="#arg-met"></a></dt>
 <dd><p>A list containing metabolite specific parameters.  e.g.
 conveniently generated by <a href="chent_focus_sw.html">chent_focus_sw</a>.  If not NULL,
 the PEC is calculated for this compound, not the parent.</p></dd>
 
 
-<dt>f_drift</dt>
+<dt id="arg-f-drift">f_drift<a class="anchor" aria-label="anchor" href="#arg-f-drift"></a></dt>
 <dd><p>The fraction of the application rate reaching the waterbody
 via drift. If NA, this is derived from the scenario name and the number
 of applications via the drift data defined by the
 <a href="FOCUS_Step_12_scenarios.html">FOCUS_Step_12_scenarios</a></p></dd>
 
 
-<dt>f_rd</dt>
+<dt id="arg-f-rd">f_rd<a class="anchor" aria-label="anchor" href="#arg-f-rd"></a></dt>
 <dd><p>The fraction of the amount applied reaching the waterbody via
 runoff/drainage. At Step 1, it is assumed to be 10%, be it the
 parent or a metabolite</p></dd>
 
 
-<dt>scenario</dt>
+<dt id="arg-scenario">scenario<a class="anchor" aria-label="anchor" href="#arg-scenario"></a></dt>
 <dd><p>The name of the scenario. Must be one of the scenario
 names given in <a href="FOCUS_Step_12_scenarios.html">FOCUS_Step_12_scenarios</a></p></dd>
 
 
-<dt>region</dt>
+<dt id="arg-region">region<a class="anchor" aria-label="anchor" href="#arg-region"></a></dt>
 <dd><p>'n' for Northern Europe or 's' for Southern Europe. If NA, only
 Step 1 PECsw are calculated</p></dd>
 
 
-<dt>season</dt>
+<dt id="arg-season">season<a class="anchor" aria-label="anchor" href="#arg-season"></a></dt>
 <dd><p>'of' for October to February, 'mm' for March to May, and 'js'
 for June to September. If NA, only step 1 PECsw are calculated</p></dd>
 
 
-<dt>interception</dt>
+<dt id="arg-interception">interception<a class="anchor" aria-label="anchor" href="#arg-interception"></a></dt>
 <dd><p>One of 'no interception' (default), 'minimal crop cover',
 'average crop cover' or 'full canopy'</p></dd>
 
 
-<dt>met_form_water</dt>
+<dt id="arg-met-form-water">met_form_water<a class="anchor" aria-label="anchor" href="#arg-met-form-water"></a></dt>
 <dd><p>Should the metabolite formation in water be taken into
 account? This can be switched off to check the influence and to compare
 with previous versions of the Steps 12 calculator</p></dd>
 
 
-<dt>txt_file</dt>
+<dt id="arg-txt-file">txt_file<a class="anchor" aria-label="anchor" href="#arg-txt-file"></a></dt>
 <dd><p>the name, and potentially the full path to the
 Steps.12 input text file to which the specification of the run(s)
 should be written</p></dd>
 
 
-<dt>overwrite</dt>
+<dt id="arg-overwrite">overwrite<a class="anchor" aria-label="anchor" href="#arg-overwrite"></a></dt>
 <dd><p>Should an existing file a the location specified in
 <code>txt_file</code> be overwritten? Only takes effect if append is FALSE.</p></dd>
 
 
-<dt>append</dt>
+<dt id="arg-append">append<a class="anchor" aria-label="anchor" href="#arg-append"></a></dt>
 <dd><p>Should the input text file be appended, if it exists?</p></dd>
 
 </dl></div>
@@ -294,23 +287,23 @@ http://esdac.jrc.ec.europa.eu/projects/stepsonetwo</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 </code></pre></div>
     </div>
-  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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-  <p></p><p>Developed by Johannes Ranke.</p>
+  <p>Developed by Johannes Ranke.</p>
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author	Ranke Johannes <johannes.ranke@agroscope.admin.ch>	2024-08-13 10:58:16 +0200
committer	Ranke Johannes <johannes.ranke@agroscope.admin.ch>	2024-08-13 11:00:17 +0200
commit	396ba6c42252426a132be56b9f417786a1f276e3 (patch)
tree	dacbad92ab168e0dfc1b70c6f8c7a3af29243d96 /docs/reference/PEC_sw_focus.html
parent	870c7f6315e2656fceea28449bdeb5b2a57adf10 (diff)