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authorJohannes Ranke <jranke@uni-bremen.de>2024-08-26 17:11:43 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2024-08-26 17:11:43 +0200
commit913c383880da2a5f4bdb71c8a82107afbad6ef13 (patch)
tree1c5a988748fc49fde4c279a96650deb26039b711 /docs/reference/PEC_sw_sed.html
parent9e62ed638e530a5cebebf491de055caca49a56ef (diff)
parent396ba6c42252426a132be56b9f417786a1f276e3 (diff)
Merge branch 'main' into crop_group
Diffstat (limited to 'docs/reference/PEC_sw_sed.html')
-rw-r--r--docs/reference/PEC_sw_sed.html90
1 files changed, 40 insertions, 50 deletions
diff --git a/docs/reference/PEC_sw_sed.html b/docs/reference/PEC_sw_sed.html
index c4b0fd8..6d377c9 100644
--- a/docs/reference/PEC_sw_sed.html
+++ b/docs/reference/PEC_sw_sed.html
@@ -1,48 +1,36 @@
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+PEC calculator"><meta property="og:description" content="The method 'percentage' is equivalent to what is used in the CRD spreadsheet
+PEC calculator"></head><body>
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- <img src="" class="logo" alt=""><h1>Calculate predicted environmental concentrations in sediment from surface
-water concentrations</h1>
+
+ <h1>Calculate predicted environmental concentrations in sediment from surface water concentrations</h1>
<small class="dont-index">Source: <a href="https://github.com/jranke/pfm/blob/HEAD/R/PEC_sw_sed.R" class="external-link"><code>R/PEC_sw_sed.R</code></a></small>
<div class="d-none name"><code>PEC_sw_sed.Rd</code></div>
</div>
@@ -58,50 +46,50 @@ PEC calculator</p>
<span> <span class="va">PEC_sw</span>,</span>
<span> percentage <span class="op">=</span> <span class="fl">100</span>,</span>
<span> method <span class="op">=</span> <span class="st">"percentage"</span>,</span>
-<span> sediment_depth <span class="op">=</span> <span class="fl">5</span>,</span>
-<span> water_depth <span class="op">=</span> <span class="fl">30</span>,</span>
-<span> sediment_density <span class="op">=</span> <span class="fl">1.3</span>,</span>
+<span> sediment_depth <span class="op">=</span> <span class="fu">set_units</span><span class="op">(</span><span class="fl">5</span>, <span class="st">"cm"</span><span class="op">)</span>,</span>
+<span> water_depth <span class="op">=</span> <span class="fu">set_units</span><span class="op">(</span><span class="fl">30</span>, <span class="st">"cm"</span><span class="op">)</span>,</span>
+<span> sediment_density <span class="op">=</span> <span class="fu">set_units</span><span class="op">(</span><span class="fl">1.3</span>, <span class="st">"kg/L"</span><span class="op">)</span>,</span>
<span> PEC_sed_units <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"µg/kg"</span>, <span class="st">"mg/kg"</span><span class="op">)</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
- <dl><dt>PEC_sw</dt>
+
+
+<dl><dt id="arg-pec-sw">PEC_sw<a class="anchor" aria-label="anchor" href="#arg-pec-sw"></a></dt>
<dd><p>Numeric vector or matrix of surface water concentrations in µg/L for
which the corresponding sediment concentration is to be estimated</p></dd>
-<dt>percentage</dt>
+<dt id="arg-percentage">percentage<a class="anchor" aria-label="anchor" href="#arg-percentage"></a></dt>
<dd><p>The percentage in sediment, used for the percentage method</p></dd>
-<dt>method</dt>
+<dt id="arg-method">method<a class="anchor" aria-label="anchor" href="#arg-method"></a></dt>
<dd><p>The method used for the calculation</p></dd>
-<dt>sediment_depth</dt>
+<dt id="arg-sediment-depth">sediment_depth<a class="anchor" aria-label="anchor" href="#arg-sediment-depth"></a></dt>
<dd><p>Depth of the sediment layer</p></dd>
-<dt>water_depth</dt>
+<dt id="arg-water-depth">water_depth<a class="anchor" aria-label="anchor" href="#arg-water-depth"></a></dt>
<dd><p>Depth of the water body in cm</p></dd>
-<dt>sediment_density</dt>
-<dd><p>The density of the sediment in L/kg (equivalent to
+<dt id="arg-sediment-density">sediment_density<a class="anchor" aria-label="anchor" href="#arg-sediment-density"></a></dt>
+<dd><p>The density of the sediment in kg/L (equivalent to
g/cm3)</p></dd>
-<dt>PEC_sed_units</dt>
+<dt id="arg-pec-sed-units">PEC_sed_units<a class="anchor" aria-label="anchor" href="#arg-pec-sed-units"></a></dt>
<dd><p>The units of the estimated sediment PEC value</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
-
-
-<p>The predicted concentration in sediment</p>
+ <p>The predicted concentration in sediment</p>
</div>
<div class="section level2">
<h2 id="author">Author<a class="anchor" aria-label="anchor" href="#author"></a></h2>
@@ -110,28 +98,30 @@ g/cm3)</p></dd>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
- <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">PEC_sw_sed</span><span class="op">(</span><span class="fu"><a href="PEC_sw_drift.html">PEC_sw_drift</a></span><span class="op">(</span><span class="fl">100</span>, distances <span class="op">=</span> <span class="fl">1</span><span class="op">)</span>, percentage <span class="op">=</span> <span class="fl">50</span><span class="op">)</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 1 m </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 2.130769 </span>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://pkgdown.jrwb.de/pfm">pfm</a></span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://r-quantities.github.io/units/" class="external-link">units</a></span><span class="op">)</span></span></span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> udunits database from /usr/share/xml/udunits/udunits2.xml</span>
+<span class="r-in"><span><span class="fu">PEC_sw_sed</span><span class="op">(</span><span class="fu"><a href="PEC_sw_drift.html">PEC_sw_drift</a></span><span class="op">(</span><span class="fl">100</span>, distances <span class="op">=</span> <span class="fl">1</span><span class="op">)</span>, percentage <span class="op">=</span> <span class="fl">50</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2.130769 [µg/kg]</span>
</code></pre></div>
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