Rebuild static docs using current pkdown

Process PELMO runs in example using 15 (hyperthreading) cores and show
processor info.

1 files changed, 32 insertions, 18 deletions

diff --git a/docs/reference/drift_data_JKI.html b/docs/reference/drift_data_JKI.html
index b85dae6..159f662 100644
--- a/docs/reference/drift_data_JKI.html
+++ b/docs/reference/drift_data_JKI.html
@@ -19,12 +19,21 @@ published by the JKI — drift_data_JKI • pfm</title>
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Deposition from spray drift expressed as percent of the applied dose as
+published by the JKI — drift_data_JKI" />
 
+<meta property="og:description" content="Deposition from spray drift expressed as percent of the applied dose as
+published by the German Julius-Kühn Institute (JKI)." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -52,6 +61,12 @@ published by the JKI — drift_data_JKI • pfm</title>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -101,24 +116,23 @@ as its licence is not clear.</p>
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
     <pre class="examples"><div class='input'>
-<span class='fu'>not_run</span>({
-    <span class='co'># This is the code that was used to extract the data</span>
-    <span class='fu'>library</span>(<span class='no'>readxl</span>)
-    <span class='no'>abdrift_path</span> <span class='kw'>&lt;-</span> <span class='st'>"inst/extdata/Tabelle der Abdrifteckwerte.xls"</span>
-    <span class='no'>JKI_crops</span> <span class='kw'>&lt;-</span> <span class='fu'>c</span>(<span class='st'>"Ackerbau"</span>, <span class='st'>"Obstbau frueh"</span>, <span class='st'>"Obstbau spaet"</span>)
-    <span class='fu'>names</span>(<span class='no'>JKI_crops</span>) <span class='kw'>&lt;-</span> <span class='fu'>c</span>(<span class='st'>"Field crops"</span>, <span class='st'>"Pome/stone fruit, early"</span>, <span class='st'>"Pome/stone fruit, late"</span>)
-    <span class='no'>drift_data_JKI</span> <span class='kw'>&lt;-</span> <span class='fu'>list</span>()
-
-    <span class='kw'>for</span> (<span class='no'>n</span> <span class='kw'>in</span> <span class='fl'>1</span>:<span class='fl'>8</span>) {
-      <span class='no'>drift_data_raw</span> <span class='kw'>&lt;-</span> <span class='fu'>read_excel</span>(<span class='no'>abdrift_path</span>, <span class='kw'>sheet</span> <span class='kw'>=</span> <span class='no'>n</span> + <span class='fl'>1</span>, <span class='kw'>skip</span> <span class='kw'>=</span> <span class='fl'>2</span>)
-      <span class='no'>drift_data</span> <span class='kw'>&lt;-</span> <span class='fu'>as.matrix</span>(<span class='no'>drift_data_raw</span>[<span class='fl'>1</span>:<span class='fl'>9</span>, <span class='fl'>2</span>:<span class='fl'>4</span>])
-      <span class='fu'>dimnames</span>(<span class='no'>drift_data</span>) <span class='kw'>&lt;-</span> <span class='fu'>list</span>(<span class='kw'>distance</span> <span class='kw'>=</span> <span class='fu'>as.integer</span>(<span class='no'>drift_data_raw</span>[<span class='fl'>1</span>:<span class='fl'>9</span>, <span class='fl'>1</span>]),
-                                              <span class='kw'>crop</span> <span class='kw'>=</span> <span class='no'>JKI_crops</span>)
-      <span class='no'>drift_data_JKI</span><span class='kw'>[[</span><span class='no'>n</span>]] <span class='kw'>&lt;-</span> <span class='no'>drift_data</span>
-    }
-    <span class='fu'>save</span>(<span class='no'>drift_data_JKI</span>, <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>"data/drift_data_JKI.RData"</span>)
-})
+</div><span class='co'># NOT RUN {</span>
+  <span class='co'># This is the code that was used to extract the data</span>
+  <span class='fu'>library</span>(<span class='no'>readxl</span>)
+  <span class='no'>abdrift_path</span> <span class='kw'>&lt;-</span> <span class='st'>"inst/extdata/Tabelle der Abdrifteckwerte.xls"</span>
+  <span class='no'>JKI_crops</span> <span class='kw'>&lt;-</span> <span class='fu'>c</span>(<span class='st'>"Ackerbau"</span>, <span class='st'>"Obstbau frueh"</span>, <span class='st'>"Obstbau spaet"</span>)
+  <span class='fu'>names</span>(<span class='no'>JKI_crops</span>) <span class='kw'>&lt;-</span> <span class='fu'>c</span>(<span class='st'>"Field crops"</span>, <span class='st'>"Pome/stone fruit, early"</span>, <span class='st'>"Pome/stone fruit, late"</span>)
+  <span class='no'>drift_data_JKI</span> <span class='kw'>&lt;-</span> <span class='fu'>list</span>()
 
+  <span class='kw'>for</span> (<span class='no'>n</span> <span class='kw'>in</span> <span class='fl'>1</span>:<span class='fl'>8</span>) {
+    <span class='no'>drift_data_raw</span> <span class='kw'>&lt;-</span> <span class='fu'>read_excel</span>(<span class='no'>abdrift_path</span>, <span class='kw'>sheet</span> <span class='kw'>=</span> <span class='no'>n</span> + <span class='fl'>1</span>, <span class='kw'>skip</span> <span class='kw'>=</span> <span class='fl'>2</span>)
+    <span class='no'>drift_data</span> <span class='kw'>&lt;-</span> <span class='fu'>as.matrix</span>(<span class='no'>drift_data_raw</span>[<span class='fl'>1</span>:<span class='fl'>9</span>, <span class='fl'>2</span>:<span class='fl'>4</span>])
+    <span class='fu'>dimnames</span>(<span class='no'>drift_data</span>) <span class='kw'>&lt;-</span> <span class='fu'>list</span>(<span class='kw'>distance</span> <span class='kw'>=</span> <span class='fu'>as.integer</span>(<span class='no'>drift_data_raw</span>[<span class='fl'>1</span>:<span class='fl'>9</span>, <span class='fl'>1</span>]),
+                                            <span class='kw'>crop</span> <span class='kw'>=</span> <span class='no'>JKI_crops</span>)
+    <span class='no'>drift_data_JKI</span><span class='kw'>[[</span><span class='no'>n</span>]] <span class='kw'>&lt;-</span> <span class='no'>drift_data</span>
+  }
+  <span class='fu'>save</span>(<span class='no'>drift_data_JKI</span>, <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>"data/drift_data_JKI.RData"</span>)
+<span class='co'># }</span><div class='input'>
 <span class='co'># And this is the resulting data</span>
 <span class='no'>drift_data_JKI</span></div><div class='output co'>#&gt; [[1]]
 #&gt;         crop
@@ -247,7 +261,7 @@ as its licence is not clear.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
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