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authorJohannes Ranke <jranke@uni-bremen.de>2024-08-26 17:11:43 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2024-08-26 17:11:43 +0200
commit913c383880da2a5f4bdb71c8a82107afbad6ef13 (patch)
tree1c5a988748fc49fde4c279a96650deb26039b711 /docs/reference/endpoint.html
parent9e62ed638e530a5cebebf491de055caca49a56ef (diff)
parent396ba6c42252426a132be56b9f417786a1f276e3 (diff)
Merge branch 'main' into crop_group
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-rw-r--r--docs/reference/endpoint.html79
1 files changed, 35 insertions, 44 deletions
diff --git a/docs/reference/endpoint.html b/docs/reference/endpoint.html
index 6705770..228d77f 100644
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+++ b/docs/reference/endpoint.html
@@ -1,49 +1,40 @@
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+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Retrieve endpoint information from the chyaml field of a chent object — endpoint • pfm</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Retrieve endpoint information from the chyaml field of a chent object — endpoint"><meta name="description" content="R6 class objects of class chent represent chemical entities
and can hold a list of information loaded from a chemical yaml file in their
chyaml field. Such information is extracted and optionally aggregated by
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+this function."><meta property="og:description" content="R6 class objects of class chent represent chemical entities
and can hold a list of information loaded from a chemical yaml file in their
chyaml field. Such information is extracted and optionally aggregated by
-this function."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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- <img src="" class="logo" alt=""><h1>Retrieve endpoint information from the chyaml field of a chent object</h1>
+
+ <h1>Retrieve endpoint information from the chyaml field of a chent object</h1>
<small class="dont-index">Source: <a href="https://github.com/jranke/pfm/blob/HEAD/R/endpoint.R" class="external-link"><code>R/endpoint.R</code></a></small>
<div class="d-none name"><code>endpoint.Rd</code></div>
</div>
@@ -94,59 +85,59 @@ this function.</p>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
- <dl><dt>chent</dt>
+
+
+<dl><dt id="arg-chent">chent<a class="anchor" aria-label="anchor" href="#arg-chent"></a></dt>
<dd><p>The chent object to get the information from</p></dd>
-<dt>medium</dt>
+<dt id="arg-medium">medium<a class="anchor" aria-label="anchor" href="#arg-medium"></a></dt>
<dd><p>The medium for which information is sought</p></dd>
-<dt>type</dt>
+<dt id="arg-type">type<a class="anchor" aria-label="anchor" href="#arg-type"></a></dt>
<dd><p>The information type</p></dd>
-<dt>lab_field</dt>
+<dt id="arg-lab-field">lab_field<a class="anchor" aria-label="anchor" href="#arg-lab-field"></a></dt>
<dd><p>If not NA, do we want laboratory or field endpoints</p></dd>
-<dt>redox</dt>
+<dt id="arg-redox">redox<a class="anchor" aria-label="anchor" href="#arg-redox"></a></dt>
<dd><p>If not NA, are we looking for aerobic or anaerobic data</p></dd>
-<dt>value</dt>
+<dt id="arg-value">value<a class="anchor" aria-label="anchor" href="#arg-value"></a></dt>
<dd><p>The name of the value we want. The list given in the
usage section is not exclusive</p></dd>
-<dt>aggregator</dt>
+<dt id="arg-aggregator">aggregator<a class="anchor" aria-label="anchor" href="#arg-aggregator"></a></dt>
<dd><p>The aggregator function. Can be mean,
<code><a href="geomean.html">geomean</a></code>, or identity, for example.</p></dd>
-<dt>raw</dt>
+<dt id="arg-raw">raw<a class="anchor" aria-label="anchor" href="#arg-raw"></a></dt>
<dd><p>Should the number(s) be returned as stored in the chent
object (could be a character value) to retain original information
about precision?</p></dd>
-<dt>signif</dt>
+<dt id="arg-signif">signif<a class="anchor" aria-label="anchor" href="#arg-signif"></a></dt>
<dd><p>How many significant digits do we want</p></dd>
-<dt>values</dt>
+<dt id="arg-values">values<a class="anchor" aria-label="anchor" href="#arg-values"></a></dt>
<dd><p>The values to be returned</p></dd>
-<dt>aggregators</dt>
+<dt id="arg-aggregators">aggregators<a class="anchor" aria-label="anchor" href="#arg-aggregators"></a></dt>
<dd><p>A named vector of aggregator functions to be used</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
-
-
-<p>The result from applying the aggregator function to
+ <p>The result from applying the aggregator function to
the values converted to a numeric vector, rounded to the
given number of significant digits, or, if raw = TRUE,
the values as a character value, retaining any implicit
@@ -160,23 +151,23 @@ facilitate dealing with such data in R. In pesticide fate modelling, this
exponent is often called 1/n.</p>
</div>
- </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+ </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
</nav></aside></div>
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- <p></p><p>Developed by Johannes Ranke.</p>
+ <p>Developed by Johannes Ranke.</p>
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- <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
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