Separate out PELMO utilities into rPELMO

author: Johannes Ranke <jranke@uni-bremen.de> 2019-01-31 01:40:24 +0100
committer: Johannes Ranke <jranke@uni-bremen.de> 2019-01-31 01:40:24 +0100
commit: b935273d651301b271e0cb66bf36c2bbc1d15b32 (patch)
tree: c671ea734cbf9266365c404ad93982f375de1519 /docs/reference/index.html
parent: 1611dd58df6b2b2e6ad01af6573664da8ce8b6b9 (diff)
1 files changed, 39 insertions, 53 deletions
diff --git a/docs/reference/index.html b/docs/reference/index.html
index d57bc84..dd8d213 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -1,6 +1,6 @@
 <!-- Generated by pkgdown: do not edit by hand -->
 <!DOCTYPE html>
-<html>
+<html lang="en">
   <head>
   <meta charset="utf-8">
 <meta http-equiv="X-UA-Compatible" content="IE=edge">
@@ -9,17 +9,17 @@
 <title>Function reference • pfm</title>
 
 <!-- jquery -->
-<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
 <!-- Bootstrap -->
 
-<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
-<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha256-916EbMg70RQy9LHiGkXzG8hSg9EdNy97GazNG/aiY1w=" crossorigin="anonymous" />
+<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
 
 <!-- Font Awesome icons -->
-<link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css" integrity="sha256-eZrrJcwDc/3uDhsdt61sL2oOBY362qM3lon1gyExkL0=" crossorigin="anonymous" />
 
 <!-- clipboard.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script>
 
 <!-- sticky kit -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
@@ -35,7 +35,8 @@
 
 
 <!-- mathjax -->
-<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
 
 <!--[if lt IE 9]>
 <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
@@ -51,14 +52,15 @@
       <div class="navbar navbar-default navbar-fixed-top" role="navigation">
   <div class="container">
     <div class="navbar-header">
-      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
+      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
+        <span class="sr-only">Toggle navigation</span>
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">pfm</a>
-        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.2</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span>
       </span>
     </div>
 
@@ -183,6 +185,12 @@
       </tr><tr>
         
         <td>
+          <p><code><a href="PEC_soil_mets.html">PEC_soil_mets()</a></code> </p>
+        </td>
+        <td><p>Calculate initial and accumulation PEC soil for a set of metabolites</p></td>
+      </tr><tr>
+        
+        <td>
           <p><code><a href="soil_scenario_data_EFSA_2015.html">soil_scenario_data_EFSA_2015</a></code> </p>
         </td>
         <td><p>Properties of the predefined scenarios from the EFSA guidance from 2015</p></td>
@@ -192,6 +200,12 @@
           <p><code><a href="soil_scenario_data_EFSA_2017.html">soil_scenario_data_EFSA_2017</a></code> </p>
         </td>
         <td><p>Properties of the predefined scenarios from the EFSA guidance from 2017</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="PEC_FOMC_accu_rel.html">PEC_FOMC_accu_rel()</a></code> </p>
+        </td>
+        <td><p>Get the relative accumulation of an FOMC model over multiples of an interval</p></td>
       </tr>
     </tbody><tbody>
       <tr>
@@ -206,48 +220,6 @@
           <p><code><a href="FOCUS_GW_scenarios_2012.html">FOCUS_GW_scenarios_2012</a></code> </p>
         </td>
         <td><p>A very small subset of the FOCUS Groundwater scenario definitions</p></td>
-      </tr><tr>
-        
-        <td>
-          <p><code><a href="create_run_list.html">create_run_list()</a></code> </p>
-        </td>
-        <td><p>Create a list of runs that we can traverse</p></td>
-      </tr><tr>
-        
-        <td>
-          <p><code><a href="PELMO_runs.html">PELMO_runs()</a></code> <code><a href="PELMO_runs.html">run_PELMO()</a></code> <code><a href="PELMO_runs.html">evaluate_PELMO()</a></code> </p>
-        </td>
-        <td><p>Set up runs for FOCUS PELMO</p></td>
-      </tr><tr>
-        
-        <td>
-          <p><code><a href="PELMO_path.html">PELMO_path()</a></code> </p>
-        </td>
-        <td><p>Create a path of run directories as the PELMO GUI does</p></td>
-      </tr><tr>
-        
-        <td>
-          <p><code><a href="FOCUS_PELMO_crop_sze_names.html">FOCUS_PELMO_crop_sze_names</a></code> </p>
-        </td>
-        <td><p>FOCUS PELMO crop acronyms used for naming sceneario files</p></td>
-      </tr><tr>
-        
-        <td>
-          <p><code><a href="FOCUS_PELMO_crops.html">FOCUS_PELMO_crops</a></code> </p>
-        </td>
-        <td><p>FOCUS PELMO crop names</p></td>
-      </tr><tr>
-        
-        <td>
-          <p><code><a href="FOCUS_PELMO_location_codes.html">FOCUS_PELMO_location_codes</a></code> </p>
-        </td>
-        <td><p>Location codes in FOCUS PELMO</p></td>
-      </tr><tr>
-        
-        <td>
-          <p><code><a href="focus_80th.html">focus_80th()</a></code> </p>
-        </td>
-        <td><p>Calculate the 80th percentile according to FOCUS guidance</p></td>
       </tr>
     </tbody><tbody>
       <tr>
@@ -357,6 +329,20 @@ water concentrations</p></td>
         </td>
         <td><p>Groundwater ubiquity score based on Gustafson (1989)</p></td>
       </tr>
+    </tbody><tbody>
+      <tr>
+        <th colspan="2">
+          <h2 id="section-utilities" class="hasAnchor"><a href="#section-utilities" class="anchor"></a>Utilities</h2>
+          <p class="section-desc"></p>
+        </th>
+      </tr>
+      <tr>
+        
+        <td>
+          <p><code><a href="get_vertex.html">get_vertex()</a></code> </p>
+        </td>
+        <td><p>Fit a parabola through three points</p></td>
+      </tr>
     </tbody>
     </table>
   </div>
@@ -369,6 +355,7 @@ water concentrations</p></td>
       <li><a href="#section-predicted-environmental-concentrations-in-groundwater">Predicted environmental concentrations in groundwater</a></li>
       <li><a href="#section-predicted-environmental-concentrations-in-surface-water">Predicted environmental concentrations in surface water</a></li>
       <li><a href="#section-classifications-and-indicators">Classifications and indicators</a></li>
+      <li><a href="#section-utilities">Utilities</a></li>
     </ul>
   </div>
 </div>
@@ -379,9 +366,8 @@ water concentrations</p></td>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
 </div>
-
       </footer>
    </div>
author	Johannes Ranke <jranke@uni-bremen.de>	2019-01-31 01:40:24 +0100
committer	Johannes Ranke <jranke@uni-bremen.de>	2019-01-31 01:40:24 +0100
commit	b935273d651301b271e0cb66bf36c2bbc1d15b32 (patch)
tree	c671ea734cbf9266365c404ad93982f375de1519 /docs/reference/index.html
parent	1611dd58df6b2b2e6ad01af6573664da8ce8b6b9 (diff)