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authorRanke Johannes <johannes.ranke@agroscope.admin.ch>2024-01-31 14:09:50 +0100
committerRanke Johannes <johannes.ranke@agroscope.admin.ch>2024-01-31 14:09:50 +0100
commitf58caa911add00f02c8be879018f370299ff02bf (patch)
tree2d8375bf1fedbd4a85f146ad9b2f91fc9560b82e /docs/reference/index.html
parent6a3c816f4a08e2e9b1ae4d1a64dcd4331af8a73a (diff)
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- <h1>Reference</h1>
- </div>
-
- <table class="ref-index"><colgroup><col class="alias"><col class="title"></colgroup><tbody><tr><th colspan="2">
- <h2 id="general-utility-functions">General utility functions <a href="#general-utility-functions" class="anchor" aria-hidden="true"></a></h2>
- <p class="section-desc"></p><p>Functions that are independent of specific fate modelling areas</p>
- </th>
- </tr></tbody><tbody><tr><td>
- <p><code><a href="geomean.html">geomean()</a></code> </p>
- </td>
- <td><p>Calculate the geometric mean</p></td>
- </tr><tr><td>
- <p><code><a href="one_box.html">one_box()</a></code> </p>
- </td>
- <td><p>Create a time series of decline data</p></td>
- </tr><tr><td>
- <p><code><a href="plot.one_box.html">plot(<i>&lt;one_box&gt;</i>)</a></code> </p>
- </td>
- <td><p>Plot time series of decline data</p></td>
- </tr><tr><td>
- <p><code><a href="sawtooth.html">sawtooth()</a></code> </p>
- </td>
- <td><p>Create decline time series for multiple applications</p></td>
- </tr><tr><td>
- <p><code><a href="twa.html">twa()</a></code> </p>
- </td>
- <td><p>Calculate a time weighted average concentration</p></td>
- </tr><tr><td>
- <p><code><a href="max_twa.html">max_twa()</a></code> </p>
- </td>
- <td><p>The maximum time weighted average concentration for a moving window</p></td>
- </tr><tr><td>
- <p><code><a href="pfm_degradation.html">pfm_degradation()</a></code> </p>
- </td>
- <td><p>Calculate a time course of relative concentrations based on an mkinmod model</p></td>
- </tr><tr><td>
- <p><code><a href="SFO_actual_twa.html">SFO_actual_twa()</a></code> </p>
- </td>
- <td><p>Actual and maximum moving window time average concentrations for SFO kinetics</p></td>
- </tr><tr><td>
- <p><code><a href="FOMC_actual_twa.html">FOMC_actual_twa()</a></code> </p>
- </td>
- <td><p>Actual and maximum moving window time average concentrations for FOMC kinetics</p></td>
- </tr><tr><td>
- <p><code><a href="reexports.html">reexports</a></code> <code><a href="reexports.html">set_nd_nq</a></code> <code><a href="reexports.html">set_nd_nq_focus</a></code> </p>
- </td>
- <td><p>Objects exported from other packages</p></td>
- </tr><tr><td>
- <p><code><a href="TSCF.html">TSCF()</a></code> </p>
- </td>
- <td><p>Estimation of the transpiration stream concentration factor</p></td>
- </tr></tbody><tbody><tr><th colspan="2">
- <h2 id="predicted-environmental-concentrations-in-soil">Predicted environmental concentrations in soil <a href="#predicted-environmental-concentrations-in-soil" class="anchor" aria-hidden="true"></a></h2>
- <p class="section-desc"></p>
- </th>
- </tr></tbody><tbody><tr><td>
- <p><code><a href="PEC_soil.html">PEC_soil()</a></code> </p>
- </td>
- <td><p>Calculate predicted environmental concentrations in soil</p></td>
- </tr><tr><td>
- <p><code><a href="PEC_soil_mets.html">PEC_soil_mets()</a></code> </p>
- </td>
- <td><p>Calculate initial and accumulation PEC soil for a set of metabolites</p></td>
- </tr><tr><td>
- <p><code><a href="soil_scenario_data_EFSA_2015.html">soil_scenario_data_EFSA_2015</a></code> </p>
- </td>
- <td><p>Properties of the predefined scenarios from the EFSA guidance from 2015</p></td>
- </tr><tr><td>
- <p><code><a href="soil_scenario_data_EFSA_2017.html">soil_scenario_data_EFSA_2017</a></code> </p>
- </td>
- <td><p>Properties of the predefined scenarios from the EFSA guidance from 2017</p></td>
- </tr><tr><td>
- <p><code><a href="PEC_FOMC_accu_rel.html">PEC_FOMC_accu_rel()</a></code> </p>
- </td>
- <td><p>Get the relative accumulation of an FOMC model over multiples of an interval</p></td>
- </tr><tr><td>
- <p><code><a href="EFSA_washoff_2017.html">EFSA_washoff_2017</a></code> </p>
- </td>
- <td><p>Subset of EFSA crop washoff default values</p></td>
- </tr></tbody><tbody><tr><th colspan="2">
- <h2 id="predicted-environmental-concentrations-in-groundwater">Predicted environmental concentrations in groundwater <a href="#predicted-environmental-concentrations-in-groundwater" class="anchor" aria-hidden="true"></a></h2>
- <p class="section-desc"></p>
- </th>
- </tr></tbody><tbody><tr><td>
- <p><code><a href="FOCUS_GW_scenarios_2012.html">FOCUS_GW_scenarios_2012</a></code> </p>
- </td>
- <td><p>A very small subset of the FOCUS Groundwater scenario definitions</p></td>
- </tr><tr><td>
- <p><code><a href="EFSA_GW_interception_2014.html">EFSA_GW_interception_2014</a></code> </p>
- </td>
- <td><p>Subset of EFSA crop interception default values for groundwater modelling</p></td>
- </tr></tbody><tbody><tr><th colspan="2">
- <h2 id="predicted-environmental-concentrations-in-surface-water">Predicted environmental concentrations in surface water <a href="#predicted-environmental-concentrations-in-surface-water" class="anchor" aria-hidden="true"></a></h2>
- <p class="section-desc"></p>
- </th>
- </tr></tbody><tbody><tr><td>
- <p><code><a href="PEC_sw_drift.html">PEC_sw_drift()</a></code> </p>
- </td>
- <td><p>Calculate predicted environmental concentrations in surface water due to drift</p></td>
- </tr><tr><td>
- <p><code><a href="drift_data_JKI.html">drift_data_JKI</a></code> </p>
- </td>
- <td><p>Deposition from spray drift expressed as percent of the applied dose as
-published by the JKI</p></td>
- </tr><tr><td>
- <p><code><a href="PEC_sw_drainage_UK.html">PEC_sw_drainage_UK()</a></code> </p>
- </td>
- <td><p>Calculate initial predicted environmental concentrations in surface water due to drainage using the UK method</p></td>
- </tr><tr><td>
- <p><code><a href="PEC_sw_sed.html">PEC_sw_sed()</a></code> </p>
- </td>
- <td><p>Calculate predicted environmental concentrations in sediment from surface
-water concentrations</p></td>
- </tr><tr><td>
- <p><code><a href="PEC_sw_focus.html">PEC_sw_focus()</a></code> </p>
- </td>
- <td><p>Calculate PEC surface water at FOCUS Step 1</p></td>
- </tr><tr><td>
- <p><code><a href="chent_focus_sw.html">chent_focus_sw()</a></code> </p>
- </td>
- <td><p>Create a chemical compound object for FOCUS Step 1 calculations</p></td>
- </tr><tr><td>
- <p><code><a href="FOCUS_Step_12_scenarios.html">FOCUS_Step_12_scenarios</a></code> </p>
- </td>
- <td><p>Step 1/2 scenario data as distributed with the FOCUS Step 1/2 calculator</p></td>
- </tr><tr><td>
- <p><code><a href="PEC_sw_exposit_drainage.html">PEC_sw_exposit_drainage()</a></code> </p>
- </td>
- <td><p>Calculate PEC surface water due to drainage as in Exposit 3</p></td>
- </tr><tr><td>
- <p><code><a href="PEC_sw_exposit_runoff.html">PEC_sw_exposit_runoff()</a></code> </p>
- </td>
- <td><p>Calculate PEC surface water due to runoff and erosion as in Exposit 3</p></td>
- </tr><tr><td>
- <p><code><a href="perc_runoff_exposit.html">perc_runoff_exposit</a></code> </p>
- </td>
- <td><p>Runoff loss percentages as used in Exposit 3</p></td>
- </tr><tr><td>
- <p><code><a href="perc_runoff_reduction_exposit.html">perc_runoff_reduction_exposit</a></code> </p>
- </td>
- <td><p>Runoff reduction percentages as used in Exposit</p></td>
- </tr><tr><td>
- <p><code><a href="TOXSWA_cwa.html">TOXSWA_cwa</a></code> </p>
- </td>
- <td><p>R6 class for holding TOXSWA water concentration data and associated statistics</p></td>
- </tr><tr><td>
- <p><code><a href="read.TOXSWA_cwa.html">read.TOXSWA_cwa()</a></code> </p>
- </td>
- <td><p>Read TOXSWA surface water concentrations</p></td>
- </tr><tr><td>
- <p><code><a href="plot.TOXSWA_cwa.html">plot(<i>&lt;TOXSWA_cwa&gt;</i>)</a></code> </p>
- </td>
- <td><p>Plot TOXSWA surface water concentrations</p></td>
- </tr></tbody><tbody><tr><th colspan="2">
- <h2 id="classifications-and-indicators">Classifications and indicators <a href="#classifications-and-indicators" class="anchor" aria-hidden="true"></a></h2>
- <p class="section-desc"></p><p>Evaluating environmental fate properties</p>
- </th>
- </tr></tbody><tbody><tr><td>
- <p><code><a href="SSLRC_mobility_classification.html">SSLRC_mobility_classification()</a></code> </p>
- </td>
- <td><p>Determine the SSLRC mobility classification for a chemical substance from its Koc</p></td>
- </tr><tr><td>
- <p><code><a href="GUS.html">GUS()</a></code> <code><a href="GUS.html">print(<i>&lt;GUS_result&gt;</i>)</a></code> </p>
- </td>
- <td><p>Groundwater ubiquity score based on Gustafson (1989)</p></td>
- </tr></tbody><tbody><tr><th colspan="2">
- <h2 id="work-with-chent-objects-containing-relevant-information">Work with chent objects containing relevant information <a href="#work-with-chent-objects-containing-relevant-information" class="anchor" aria-hidden="true"></a></h2>
- <p class="section-desc"></p>
- </th>
- </tr></tbody><tbody><tr><td>
- <p><code><a href="endpoint.html">endpoint()</a></code> <code><a href="endpoint.html">soil_DT50()</a></code> <code><a href="endpoint.html">soil_Kfoc()</a></code> <code><a href="endpoint.html">soil_N()</a></code> <code><a href="endpoint.html">soil_sorption()</a></code> </p>
- </td>
- <td><p>Retrieve endpoint information from the chyaml field of a chent object</p></td>
- </tr></tbody><tbody><tr><th colspan="2">
- <h2 id="utilities">Utilities <a href="#utilities" class="anchor" aria-hidden="true"></a></h2>
- <p class="section-desc"></p>
- </th>
- </tr></tbody><tbody><tr><td>
- <p><code><a href="get_vertex.html">get_vertex()</a></code> </p>
- </td>
- <td><p>Fit a parabola through three points</p></td>
- </tr></tbody></table></div>
-
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- <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
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- <p></p><p>Developed by Johannes Ranke.</p>
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-=======
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+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Function reference • pfm</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Function reference"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--></head><body>
@@ -245,7 +10,7 @@ water concentrations</p></td>
<a class="navbar-brand me-2" href="../index.html">pfm</a>
- <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.6.0</small>
+ <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.6.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -553,16 +318,10 @@ water concentrations</dd>
</div>
</footer></div>
->>>>>>> refs/remotes/origin/main
-
-
-<<<<<<< HEAD
-=======
->>>>>>> refs/remotes/origin/main
</body></html>

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