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authorRanke Johannes <johannes.ranke@agroscope.admin.ch>2026-06-22 18:01:11 +0200
committerRanke Johannes <johannes.ranke@agroscope.admin.ch>2026-06-22 18:01:11 +0200
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+# Package index
+
+## General utility functions
+
+Functions that are independent of specific fate modelling areas
+
+- [`geomean()`](https://pkgdown.jrwb.de/pfm/reference/geomean.md) :
+ Calculate the geometric mean
+- [`one_box()`](https://pkgdown.jrwb.de/pfm/reference/one_box.md) :
+ Create a time series of decline data
+- [`plot(`*`<one_box>`*`)`](https://pkgdown.jrwb.de/pfm/reference/plot.one_box.md)
+ : Plot time series of decline data
+- [`sawtooth()`](https://pkgdown.jrwb.de/pfm/reference/sawtooth.md) :
+ Create decline time series for multiple applications
+- [`twa()`](https://pkgdown.jrwb.de/pfm/reference/twa.md) : Calculate a
+ time weighted average concentration
+- [`max_twa()`](https://pkgdown.jrwb.de/pfm/reference/max_twa.md) : The
+ maximum time weighted average concentration for a moving window
+- [`pfm_degradation()`](https://pkgdown.jrwb.de/pfm/reference/pfm_degradation.md)
+ : Calculate a time course of relative concentrations based on an
+ mkinmod model
+- [`SFO_actual_twa()`](https://pkgdown.jrwb.de/pfm/reference/SFO_actual_twa.md)
+ : Actual and maximum moving window time average concentrations for SFO
+ kinetics
+- [`FOMC_actual_twa()`](https://pkgdown.jrwb.de/pfm/reference/FOMC_actual_twa.md)
+ : Actual and maximum moving window time average concentrations for
+ FOMC kinetics
+- [`reexports`](https://pkgdown.jrwb.de/pfm/reference/reexports.md)
+ [`set_nd_nq`](https://pkgdown.jrwb.de/pfm/reference/reexports.md)
+ [`set_nd_nq_focus`](https://pkgdown.jrwb.de/pfm/reference/reexports.md)
+ : Objects exported from other packages
+- [`TSCF()`](https://pkgdown.jrwb.de/pfm/reference/TSCF.md) : Estimation
+ of the transpiration stream concentration factor
+
+## Predicted environmental concentrations in soil
+
+- [`PEC_soil()`](https://pkgdown.jrwb.de/pfm/reference/PEC_soil.md) :
+ Calculate predicted environmental concentrations in soil
+- [`PEC_soil_mets()`](https://pkgdown.jrwb.de/pfm/reference/PEC_soil_mets.md)
+ : Calculate initial and accumulation PEC soil for a set of metabolites
+- [`soil_scenario_data_EFSA_2015`](https://pkgdown.jrwb.de/pfm/reference/soil_scenario_data_EFSA_2015.md)
+ : Properties of the predefined scenarios from the EFSA guidance from
+ 2015
+- [`soil_scenario_data_EFSA_2017`](https://pkgdown.jrwb.de/pfm/reference/soil_scenario_data_EFSA_2017.md)
+ : Properties of the predefined scenarios from the EFSA guidance from
+ 2017
+- [`PEC_FOMC_accu_rel()`](https://pkgdown.jrwb.de/pfm/reference/PEC_FOMC_accu_rel.md)
+ : Get the relative accumulation of an FOMC model over multiples of an
+ interval
+- [`EFSA_washoff_2017`](https://pkgdown.jrwb.de/pfm/reference/EFSA_washoff_2017.md)
+ : Subset of EFSA crop washoff default values
+
+## Predicted environmental concentrations in groundwater
+
+- [`FOCUS_GW_scenarios_2012`](https://pkgdown.jrwb.de/pfm/reference/FOCUS_GW_scenarios_2012.md)
+ : A very small subset of the FOCUS Groundwater scenario definitions
+- [`EFSA_GW_interception_2014`](https://pkgdown.jrwb.de/pfm/reference/EFSA_GW_interception_2014.md)
+ : Subset of EFSA crop interception default values for groundwater
+ modelling
+
+## Predicted environmental concentrations in surface water
+
+- [`PEC_sw_drift()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_drift.md)
+ : Calculate predicted environmental concentrations in surface water
+ due to drift
+- [`drift_data_JKI`](https://pkgdown.jrwb.de/pfm/reference/drift_data_JKI.md)
+ : Deposition from spray drift expressed as percent of the applied dose
+ as published by the JKI
+- [`drift_parameters_focus`](https://pkgdown.jrwb.de/pfm/reference/drift_parameters_focus.md)
+ : Regression parameters for the Rautmann drift data
+- [`drift_percentages_rautmann()`](https://pkgdown.jrwb.de/pfm/reference/drift_percentages_rautmann.md)
+ : Calculate drift percentages based on Rautmann data
+- [`PEC_sw_drainage_UK()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_drainage_UK.md)
+ [`drainage_date_UK()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_drainage_UK.md)
+ : Calculate initial predicted environmental concentrations in surface
+ water due to drainage using the UK method
+- [`PEC_sw_sed()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_sed.md)
+ : Calculate predicted environmental concentrations in sediment from
+ surface water concentrations
+- [`PEC_sw_focus()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_focus.md)
+ : Calculate PEC surface water at FOCUS Step 1
+- [`chent_focus_sw()`](https://pkgdown.jrwb.de/pfm/reference/chent_focus_sw.md)
+ : Create a chemical compound object for FOCUS Step 1 calculations
+- [`FOCUS_Step_12_scenarios`](https://pkgdown.jrwb.de/pfm/reference/FOCUS_Step_12_scenarios.md)
+ : Step 1/2 scenario data as distributed with the FOCUS Step 1/2
+ calculator
+- [`PEC_sw_exposit_drainage()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_exposit_drainage.md)
+ : Calculate PEC surface water due to drainage as in Exposit 3
+- [`PEC_sw_exposit_runoff()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_exposit_runoff.md)
+ : Calculate PEC surface water due to runoff and erosion as in Exposit
+ 3
+- [`perc_runoff_exposit`](https://pkgdown.jrwb.de/pfm/reference/perc_runoff_exposit.md)
+ : Runoff loss percentages as used in Exposit 3
+- [`perc_runoff_reduction_exposit`](https://pkgdown.jrwb.de/pfm/reference/perc_runoff_reduction_exposit.md)
+ : Runoff reduction percentages as used in Exposit
+- [`TOXSWA_cwa`](https://pkgdown.jrwb.de/pfm/reference/TOXSWA_cwa.md) :
+ R6 class for holding TOXSWA water concentration data and associated
+ statistics
+- [`read.TOXSWA_cwa()`](https://pkgdown.jrwb.de/pfm/reference/read.TOXSWA_cwa.md)
+ : Read TOXSWA surface water concentrations
+- [`plot(`*`<TOXSWA_cwa>`*`)`](https://pkgdown.jrwb.de/pfm/reference/plot.TOXSWA_cwa.md)
+ : Plot TOXSWA surface water concentrations
+
+## Classifications and indicators
+
+Evaluating environmental fate properties
+
+- [`SSLRC_mobility_classification()`](https://pkgdown.jrwb.de/pfm/reference/SSLRC_mobility_classification.md)
+ : Determine the SSLRC mobility classification for a chemical substance
+ from its Koc
+- [`GUS()`](https://pkgdown.jrwb.de/pfm/reference/GUS.md)
+ [`print(`*`<GUS_result>`*`)`](https://pkgdown.jrwb.de/pfm/reference/GUS.md)
+ : Groundwater ubiquity score based on Gustafson (1989)
+
+## Work with chent objects containing relevant information
+
+- [`endpoint()`](https://pkgdown.jrwb.de/pfm/reference/endpoint.md)
+ [`soil_DT50()`](https://pkgdown.jrwb.de/pfm/reference/endpoint.md)
+ [`soil_Kfoc()`](https://pkgdown.jrwb.de/pfm/reference/endpoint.md)
+ [`soil_N()`](https://pkgdown.jrwb.de/pfm/reference/endpoint.md)
+ [`soil_sorption()`](https://pkgdown.jrwb.de/pfm/reference/endpoint.md)
+ : Retrieve endpoint information from the chyaml field of a chent
+ object
+
+## Utilities
+
+- [`get_vertex()`](https://pkgdown.jrwb.de/pfm/reference/get_vertex.md)
+ : Fit a parabola through three points

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