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authorJohannes Ranke <jranke@uni-bremen.de>2017-01-18 22:41:01 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2017-01-18 22:50:14 +0100
commita76221d87485029444c8e684022ca606a0c7e68d (patch)
treec95052ee51b35f6c5ab87bd6f27ef2877f536838 /docs/reference/plot.TOXSWA_cwa.html
parenta1d9f93138c2cfed92a683e37e72c737d52b7ad7 (diff)
Update static docs using pkgdown
- Add _pkgdown.yml for a structured function/data reference - Make seealso links active - Make mkinfit calls quiet - Use pkgdown branch from pull request hadley/pkgdown#229 to have topics ordered
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+ <h1>Plot TOXSWA surface water concentrations</h1>
+ </div>
+
+
+ <p>Plot TOXSWA hourly concentrations of a chemical substance in a specific
+segment of a TOXSWA surface water body.</p>
+
+
+ <pre><span class='co'># S3 method for TOXSWA_cwa</span>
+<span class='fu'>plot</span>(<span class='no'>x</span>, <span class='kw'>time_column</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"datetime"</span>, <span class='st'>"t"</span>, <span class='st'>"t_firstjan"</span>,
+ <span class='st'>"t_rel_to_max"</span>), <span class='kw'>xlab</span> <span class='kw'>=</span> <span class='st'>"default"</span>, <span class='kw'>ylab</span> <span class='kw'>=</span> <span class='st'>"default"</span>, <span class='kw'>add</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
+ <span class='kw'>total</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>LC_TIME</span> <span class='kw'>=</span> <span class='st'>"C"</span>, <span class='no'>...</span>)</pre>
+
+ <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+ <dl class="dl-horizontal">
+ <dt>x</dt>
+ <dd>The TOXSWA_cwa object to be plotted.</dd>
+ <dt>time_column</dt>
+ <dd>What should be used for the time axis. If &quot;t_firstjan&quot; is chosen,
+the time is given in days relative to the first of January in the first year.</dd>
+ <dt>xlab, ylab</dt>
+ <dd>Labels for x and y axis.</dd>
+ <dt>add</dt>
+ <dd>Should we add to an existing plot?</dd>
+ <dt>total</dt>
+ <dd>Should the total concentration in water be plotted, including substance sorbed
+to suspended matter?</dd>
+ <dt>LC_TIME</dt>
+ <dd>Specification of the locale used to format dates</dd>
+ <dt>...</dt>
+ <dd>Further arguments passed to <code>plot</code> if we are not adding to an existing plot</dd>
+ </dl>
+
+
+ <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
+ <pre class="examples"><div class='input'><span class='no'>H_sw_D4_pond</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='read.TOXSWA_cwa.html'>read.TOXSWA_cwa</a></span>(<span class='st'>"00001p_pa.cwa"</span>,
+ <span class='kw'>basedir</span> <span class='kw'>=</span> <span class='st'>"SwashProjects/project_H_sw/TOXSWA"</span>,
+ <span class='kw'>zipfile</span> <span class='kw'>=</span> <span class='fu'>system.file</span>(<span class='st'>"testdata/SwashProjects.zip"</span>,
+ <span class='kw'>package</span> <span class='kw'>=</span> <span class='st'>"pfm"</span>))
+<span class='fu'>plot</span>(<span class='no'>H_sw_D4_pond</span>)</div><img src='plot.TOXSWA_cwa-2.png' alt='' width='540' height='400' /></pre>
+ </div>
+ <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
+ <h2>Contents</h2>
+ <ul class="nav nav-pills nav-stacked">
+ <li><a href="#arguments">Arguments</a></li>
+
+ <li><a href="#examples">Examples</a></li>
+ </ul>
+
+ <h2>Author</h2>
+
+Johannes Ranke
+
+ </div>
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