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| author | Johannes Ranke <jranke@uni-bremen.de> | 2017-05-16 15:43:50 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2017-05-16 15:43:50 +0200 |
| commit | 36036b5901223591e7e21e8b73d8cd1fb034f4cb (patch) | |
| tree | ed8e764778aa2e94b785263d18d7d8e3dfe4e785 /docs/reference/read.TOXSWA_cwa.html | |
| parent | d042f8f06b313e8595087587455daac73d84f17b (diff) | |
Finish the Step 1 calculator including tests
Some cleaning up. PELMO facilities do not currently work at my end,
as I have no working wine installation on this computer
Diffstat (limited to 'docs/reference/read.TOXSWA_cwa.html')
| -rw-r--r-- | docs/reference/read.TOXSWA_cwa.html | 71 |
1 files changed, 45 insertions, 26 deletions
diff --git a/docs/reference/read.TOXSWA_cwa.html b/docs/reference/read.TOXSWA_cwa.html index 3afec9c..30e29cd 100644 --- a/docs/reference/read.TOXSWA_cwa.html +++ b/docs/reference/read.TOXSWA_cwa.html @@ -25,12 +25,14 @@ <script src="../pkgdown.js"></script> <!-- mathjax --> -<script src='https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> +<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> <!--[if lt IE 9]> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> <![endif]--> + + </head> <body> @@ -77,37 +79,54 @@ segment are imported. As TOXSWA 4 reports the values at the end of the hour of the hourly averages (ConLiqWatLay).</p> - <pre><span class='fu'>read.TOXSWA_cwa</span>(<span class='no'>filename</span>, <span class='kw'>basedir</span> <span class='kw'>=</span> <span class='st'>"."</span>, <span class='kw'>zipfile</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>segment</span> <span class='kw'>=</span> <span class='st'>"last"</span>, + <pre class="usage"><span class='fu'>read.TOXSWA_cwa</span>(<span class='no'>filename</span>, <span class='kw'>basedir</span> <span class='kw'>=</span> <span class='st'>"."</span>, <span class='kw'>zipfile</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>segment</span> <span class='kw'>=</span> <span class='st'>"last"</span>, <span class='kw'>substance</span> <span class='kw'>=</span> <span class='st'>"parent"</span>, <span class='kw'>total</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>windows</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>thresholds</span> <span class='kw'>=</span> <span class='kw'>NULL</span>)</pre> <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2> - <dl class="dl-horizontal"> - <dt>filename</dt> - <dd>The filename of the cwa file (TOXSWA 2.x.y or similar) or the -out file (FOCUS TOXSWA 4, i.e. TOXSWA 4.4.2 or similar).</dd> - <dt>basedir</dt> - <dd>The path to the directory where the cwa file resides.</dd> - <dt>zipfile</dt> - <dd>Optional path to a zip file containing the cwa file.</dd> - <dt>segment</dt> - <dd>The segment for which the data should be read. Either "last", or -the segment number.</dd> - <dt>substance</dt> - <dd>For TOXSWA 4 .out files, the default value "parent" leads + <table class="ref-arguments"> + <colgroup><col class="name" /><col class="desc" /></colgroup> + <tr> + <th>filename</th> + <td><p>The filename of the cwa file (TOXSWA 2.x.y or similar) or the +out file (FOCUS TOXSWA 4, i.e. TOXSWA 4.4.2 or similar).</p></td> + </tr> + <tr> + <th>basedir</th> + <td><p>The path to the directory where the cwa file resides.</p></td> + </tr> + <tr> + <th>zipfile</th> + <td><p>Optional path to a zip file containing the cwa file.</p></td> + </tr> + <tr> + <th>segment</th> + <td><p>The segment for which the data should be read. Either "last", or +the segment number.</p></td> + </tr> + <tr> + <th>substance</th> + <td><p>For TOXSWA 4 .out files, the default value "parent" leads to reading concentrations of the parent compound. Alternatively, the substance -of interested can be selected by its code name.</dd> - <dt>total</dt> - <dd>Set this to TRUE in order to read total concentrations as well. This is +of interested can be selected by its code name.</p></td> + </tr> + <tr> + <th>total</th> + <td><p>Set this to TRUE in order to read total concentrations as well. This is only necessary for .out files as generated by TOXSWA 4.4.2 or similar, not for .cwa -files. For .cwa files, the total concentration is always read as well.</dd> - <dt>windows</dt> - <dd>Numeric vector of width of moving windows in days, for calculating -maximum time weighted average concentrations and areas under the curve.</dd> - <dt>thresholds</dt> - <dd>Numeric vector of threshold concentrations in µg/L for -generating event statistics.</dd> - </dl> +files. For .cwa files, the total concentration is always read as well.</p></td> + </tr> + <tr> + <th>windows</th> + <td><p>Numeric vector of width of moving windows in days, for calculating +maximum time weighted average concentrations and areas under the curve.</p></td> + </tr> + <tr> + <th>thresholds</th> + <td><p>Numeric vector of threshold concentrations in µg/L for +generating event statistics.</p></td> + </tr> + </table> <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2> |