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authorJohannes Ranke <jranke@uni-bremen.de>2017-05-16 15:43:50 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2017-05-16 15:43:50 +0200
commit36036b5901223591e7e21e8b73d8cd1fb034f4cb (patch)
treeed8e764778aa2e94b785263d18d7d8e3dfe4e785 /docs/reference/soil_scenario_data_EFSA_2015.html
parentd042f8f06b313e8595087587455daac73d84f17b (diff)
Finish the Step 1 calculator including tests
Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer
Diffstat (limited to 'docs/reference/soil_scenario_data_EFSA_2015.html')
-rw-r--r--docs/reference/soil_scenario_data_EFSA_2015.html40
1 files changed, 21 insertions, 19 deletions
diff --git a/docs/reference/soil_scenario_data_EFSA_2015.html b/docs/reference/soil_scenario_data_EFSA_2015.html
index f842d08..39841ed 100644
--- a/docs/reference/soil_scenario_data_EFSA_2015.html
+++ b/docs/reference/soil_scenario_data_EFSA_2015.html
@@ -25,12 +25,14 @@
<script src="../pkgdown.js"></script>
<!-- mathjax -->
-<script src='https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
+<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
+
+
</head>
<body>
@@ -92,24 +94,24 @@ doi:10.2903/j.efsa.2015.4093</p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='co'>## Not run: ------------------------------------</span>
-<span class='co'># # This is the code that was used to define the data</span>
-<span class='co'># soil_scenario_data_EFSA_2015 &lt;- data.frame(</span>
-<span class='co'># Zone = rep(c("North", "Central", "South"), 2),</span>
-<span class='co'># Country = c("Estonia", "Germany", "France", "Denmark", "Czech Republik", "Spain"),</span>
-<span class='co'># T_arit = c(4.7, 8.0, 11.0, 8.2, 9.1, 12.8),</span>
-<span class='co'># T_arr = c(7.0, 10.1, 12.3, 9.8, 11.2, 14.7),</span>
-<span class='co'># Texture = c("Coarse", "Coarse", "Medium fine", "Medium", "Medium", "Medium"),</span>
-<span class='co'># f_om = c(0.118, 0.086, 0.048, 0.023, 0.018, 0.011),</span>
-<span class='co'># theta_fc = c(0.244, 0.244, 0.385, 0.347, 0.347, 0.347),</span>
-<span class='co'># rho = c(0.95, 1.05, 1.22, 1.39, 1.43, 1.51),</span>
-<span class='co'># f_sce = c(3, 2, 2, 2, 1.5, 1.5),</span>
-<span class='co'># f_mod = c(2, 2, 2, 4, 4, 4),</span>
-<span class='co'># stringsAsFactors = FALSE,</span>
-<span class='co'># row.names = c("CTN", "CTC", "CTS", "CLN", "CLC", "CLS")</span>
-<span class='co'># )</span>
-<span class='co'># save(soil_scenario_data_EFSA_2015, file = '../data/soil_scenario_data_EFSA_2015.RData')</span>
-<span class='co'>## ---------------------------------------------</span>
+ <pre class="examples"><div class='input'><span class='fu'>not_run</span>({
+ <span class='co'># This is the code that was used to define the data</span>
+ <span class='no'>soil_scenario_data_EFSA_2015</span> <span class='kw'>&lt;-</span> <span class='fu'>data.frame</span>(
+ <span class='kw'>Zone</span> <span class='kw'>=</span> <span class='fu'>rep</span>(<span class='fu'>c</span>(<span class='st'>"North"</span>, <span class='st'>"Central"</span>, <span class='st'>"South"</span>), <span class='fl'>2</span>),
+ <span class='kw'>Country</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"Estonia"</span>, <span class='st'>"Germany"</span>, <span class='st'>"France"</span>, <span class='st'>"Denmark"</span>, <span class='st'>"Czech Republik"</span>, <span class='st'>"Spain"</span>),
+ <span class='kw'>T_arit</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>4.7</span>, <span class='fl'>8.0</span>, <span class='fl'>11.0</span>, <span class='fl'>8.2</span>, <span class='fl'>9.1</span>, <span class='fl'>12.8</span>),
+ <span class='kw'>T_arr</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>7.0</span>, <span class='fl'>10.1</span>, <span class='fl'>12.3</span>, <span class='fl'>9.8</span>, <span class='fl'>11.2</span>, <span class='fl'>14.7</span>),
+ <span class='kw'>Texture</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"Coarse"</span>, <span class='st'>"Coarse"</span>, <span class='st'>"Medium fine"</span>, <span class='st'>"Medium"</span>, <span class='st'>"Medium"</span>, <span class='st'>"Medium"</span>),
+ <span class='kw'>f_om</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0.118</span>, <span class='fl'>0.086</span>, <span class='fl'>0.048</span>, <span class='fl'>0.023</span>, <span class='fl'>0.018</span>, <span class='fl'>0.011</span>),
+ <span class='kw'>theta_fc</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0.244</span>, <span class='fl'>0.244</span>, <span class='fl'>0.385</span>, <span class='fl'>0.347</span>, <span class='fl'>0.347</span>, <span class='fl'>0.347</span>),
+ <span class='kw'>rho</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0.95</span>, <span class='fl'>1.05</span>, <span class='fl'>1.22</span>, <span class='fl'>1.39</span>, <span class='fl'>1.43</span>, <span class='fl'>1.51</span>),
+ <span class='kw'>f_sce</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>3</span>, <span class='fl'>2</span>, <span class='fl'>2</span>, <span class='fl'>2</span>, <span class='fl'>1.5</span>, <span class='fl'>1.5</span>),
+ <span class='kw'>f_mod</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>2</span>, <span class='fl'>2</span>, <span class='fl'>2</span>, <span class='fl'>4</span>, <span class='fl'>4</span>, <span class='fl'>4</span>),
+ <span class='kw'>stringsAsFactors</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
+ <span class='kw'>row.names</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"CTN"</span>, <span class='st'>"CTC"</span>, <span class='st'>"CTS"</span>, <span class='st'>"CLN"</span>, <span class='st'>"CLC"</span>, <span class='st'>"CLS"</span>)
+ )
+ <span class='fu'>save</span>(<span class='no'>soil_scenario_data_EFSA_2015</span>, <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>'../data/soil_scenario_data_EFSA_2015.RData'</span>)
+})
<span class='co'># And this is the resulting dataframe</span>
<span class='no'>soil_scenario_data_EFSA_2015</span></div><div class='output co'>#&gt; Zone Country T_arit T_arr Texture f_om theta_fc rho f_sce

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