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authorRanke Johannes <johannes.ranke@agroscope.admin.ch>2024-01-31 13:16:17 +0100
committerRanke Johannes <johannes.ranke@agroscope.admin.ch>2024-01-31 13:27:50 +0100
commitaed160d7f0eaf5865e2bd9bf6c4b1c9d7b13d911 (patch)
tree7ca136834857c12449f50a1e086a589cc9b79e2e /docs/reference/soil_scenario_data_EFSA_2017.html
parent64f629efbe666bae56f48a309adf33d1eb09c358 (diff)
Reorganise data generation
- Use inst/data_generation for R code generating data as in some of my other packages - data/*.RData files were checked using https://github.com/jranke/dotfiles/blob/main/bin/rda_diff contents were not changed - Remove ChangeLog, the history is in the git logs - Update docs and some links contained therein - use \doi{} markup - Move logs to log directory
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<h1>Properties of the predefined scenarios from the EFSA guidance from 2017</h1>
@@ -116,61 +47,98 @@ concentration in soil as given in the EFSA guidance (2017, p. 14/15). Also, the
scenario and model adjustment factors from p. 16 and p. 18 are included.</p>
</div>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="va">soil_scenario_data_EFSA_2017</span></span></code></pre></div>
+ </div>
-
- <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
-
+ <div id="format">
+ <h2>Format</h2>
<p>A data frame with one row for each scenario. Row names are the scenario codes,
e.g. CTN for the Northern scenario for the total concentration in soil. Columns are
mostly self-explanatory. <code>rho</code> is the dry bulk density of the top soil.</p>
- <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
-
+ </div>
+ <div id="source">
+ <h2>Source</h2>
<p>EFSA (European Food Safety Authority) (2017)
EFSA guidance document for predicting environmental concentrations
of active substances of plant protection products and transformation products of these
active substances in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982
- doi:10.2903/j.efsa.2017.4982</p>
-
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='no'>soil_scenario_data_EFSA_2017</span></div><div class='output co'>#&gt; Zone Country T_arit T_arr Texture f_om theta_fc rho f_sce f_mod
-#&gt; CTN North Estonia 5.7 7.6 Coarse 0.220 0.244 0.707 1.4 3
-#&gt; CTC Central Poland 7.4 9.3 Coarse 0.122 0.244 0.934 1.4 3
-#&gt; CTS South France 10.2 11.7 Medium 0.070 0.349 1.117 1.4 3
-#&gt; CLN North Denmark 8.0 9.2 Medium 0.025 0.349 1.371 1.6 4
-#&gt; CLC Central Austria 9.3 11.3 Medium 0.018 0.349 1.432 1.6 4
-#&gt; CLS South Spain 15.4 16.7 Medium 0.010 0.349 1.521 1.6 4
-#&gt; FOCUS_zone prec
-#&gt; CTN Hamburg 639
-#&gt; CTC Hamburg 617
-#&gt; CTS Hamburg 667
-#&gt; CLN Hamburg 602
-#&gt; CLC Châteaudun 589
-#&gt; CLS Sevilla 526</div></pre>
+ <a href="https://doi.org/10.2903/j.efsa.2017.4982" class="external-link">doi:10.2903/j.efsa.2017.4982</a></p>
+ </div>
+
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">soil_scenario_data_EFSA_2017</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Zone Country T_arit T_arr Texture f_om theta_fc rho f_sce f_mod</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CTN North Estonia 5.7 7.6 Coarse 0.220 0.244 0.707 1.4 3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CTC Central Poland 7.4 9.3 Coarse 0.122 0.244 0.934 1.4 3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CTS South France 10.2 11.7 Medium 0.070 0.349 1.117 1.4 3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CLN North Denmark 8.0 9.2 Medium 0.025 0.349 1.371 1.6 4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CLC Central Austria 9.3 11.3 Medium 0.018 0.349 1.432 1.6 4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CLS South Spain 15.4 16.7 Medium 0.010 0.349 1.521 1.6 4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> FOCUS_zone prec</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CTN Hamburg 639</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CTC Hamburg 617</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CTS Hamburg 667</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CLN Hamburg 602</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CLC Châteaudun 589</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> CLS Sevilla 526</span>
+<span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="fu">waldo</span><span class="fu">::</span><span class="fu"><a href="https://waldo.r-lib.org/reference/compare.html" class="external-link">compare</a></span><span class="op">(</span><span class="va">soil_scenario_data_EFSA_2017</span>, <span class="va">soil_scenario_data_EFSA_2015</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `old` is length 12</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `new` is length 10</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `names(old)[8:12]`: <span style="color: #555555;">"rho"</span> <span style="color: #555555;">"f_sce"</span> <span style="color: #555555;">"f_mod"</span> <span style="color: #BBBB00;">"FOCUS_zone"</span> <span style="color: #BBBB00;">"prec"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `names(new)[8:10]`: <span style="color: #555555;">"rho"</span> <span style="color: #555555;">"f_sce"</span> <span style="color: #555555;">"f_mod"</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `old$Country`: <span style="color: #555555;">"Estonia"</span> <span style="color: #00BB00;">"Poland"</span> <span style="color: #555555;">"France"</span> <span style="color: #555555;">"Denmark"</span> <span style="color: #00BB00;">"Austria"</span> <span style="color: #555555;">"Spain"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `new$Country`: <span style="color: #555555;">"Estonia"</span> <span style="color: #00BB00;">"Germany"</span> <span style="color: #555555;">"France"</span> <span style="color: #555555;">"Denmark"</span> <span style="color: #00BB00;">"Czech Republik"</span> <span style="color: #555555;">"Spain"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `old$T_arit`: <span style="color: #00BB00;">5.7</span> <span style="color: #00BB00;">7.4</span> <span style="color: #00BB00;">10.2</span> <span style="color: #00BB00;">8.0</span> <span style="color: #00BB00;">9.3</span> <span style="color: #00BB00;">15.4</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `new$T_arit`: <span style="color: #00BB00;">4.7</span> <span style="color: #00BB00;">8.0</span> <span style="color: #00BB00;">11.0</span> <span style="color: #00BB00;">8.2</span> <span style="color: #00BB00;">9.1</span> <span style="color: #00BB00;">12.8</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `old$T_arr`: <span style="color: #00BB00;">7.6</span> <span style="color: #00BB00;">9.3</span> <span style="color: #00BB00;">11.7</span> <span style="color: #00BB00;">9.2</span> <span style="color: #00BB00;">11.3</span> <span style="color: #00BB00;">16.7</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `new$T_arr`: <span style="color: #00BB00;">7.0</span> <span style="color: #00BB00;">10.1</span> <span style="color: #00BB00;">12.3</span> <span style="color: #00BB00;">9.8</span> <span style="color: #00BB00;">11.2</span> <span style="color: #00BB00;">14.7</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `old$Texture`: <span style="color: #555555;">"Coarse"</span> <span style="color: #555555;">"Coarse"</span> <span style="color: #00BB00;">"Medium"</span> <span style="color: #555555;">"Medium"</span> <span style="color: #555555;">"Medium"</span> <span style="color: #555555;">"Medium"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `new$Texture`: <span style="color: #555555;">"Coarse"</span> <span style="color: #555555;">"Coarse"</span> <span style="color: #00BB00;">"Medium fine"</span> <span style="color: #555555;">"Medium"</span> <span style="color: #555555;">"Medium"</span> <span style="color: #555555;">"Medium"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `old$f_om`: <span style="color: #00BB00;">0.220</span> <span style="color: #00BB00;">0.122</span> <span style="color: #00BB00;">0.070</span> <span style="color: #00BB00;">0.025</span> <span style="color: #555555;">0.018</span> <span style="color: #00BB00;">0.010</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `new$f_om`: <span style="color: #00BB00;">0.118</span> <span style="color: #00BB00;">0.086</span> <span style="color: #00BB00;">0.048</span> <span style="color: #00BB00;">0.023</span> <span style="color: #555555;">0.018</span> <span style="color: #00BB00;">0.011</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `old$theta_fc`: <span style="color: #555555;">0.244</span> <span style="color: #555555;">0.244</span> <span style="color: #00BB00;">0.349</span> <span style="color: #00BB00;">0.349</span> <span style="color: #00BB00;">0.349</span> <span style="color: #00BB00;">0.349</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `new$theta_fc`: <span style="color: #555555;">0.244</span> <span style="color: #555555;">0.244</span> <span style="color: #00BB00;">0.385</span> <span style="color: #00BB00;">0.347</span> <span style="color: #00BB00;">0.347</span> <span style="color: #00BB00;">0.347</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `old$rho`: <span style="color: #00BB00;">0.707</span> <span style="color: #00BB00;">0.934</span> <span style="color: #00BB00;">1.117</span> <span style="color: #00BB00;">1.371</span> <span style="color: #00BB00;">1.432</span> <span style="color: #00BB00;">1.521</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `new$rho`: <span style="color: #00BB00;">0.950</span> <span style="color: #00BB00;">1.050</span> <span style="color: #00BB00;">1.220</span> <span style="color: #00BB00;">1.390</span> <span style="color: #00BB00;">1.430</span> <span style="color: #00BB00;">1.510</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `old$f_sce`: <span style="color: #00BB00;">1.4</span> <span style="color: #00BB00;">1.4</span> <span style="color: #00BB00;">1.4</span> <span style="color: #00BB00;">1.6</span> <span style="color: #00BB00;">1.6</span> <span style="color: #00BB00;">1.6</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> `new$f_sce`: <span style="color: #00BB00;">3.0</span> <span style="color: #00BB00;">2.0</span> <span style="color: #00BB00;">2.0</span> <span style="color: #00BB00;">2.0</span> <span style="color: #00BB00;">1.5</span> <span style="color: #00BB00;">1.5</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> And 3 more differences ...</span>
+</code></pre></div>
+ </div>
</div>
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