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| author | Johannes Ranke <jranke@uni-bremen.de> | 2023-11-12 21:59:34 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2023-11-12 21:59:34 +0100 |
| commit | 4079a2c496aa4e8c6dc2a93afedcbedbf7a852b5 (patch) | |
| tree | 8281ddd094c84d3bd0663fe2f060985f4a212e6b /docs/reference | |
| parent | d66bd4aa0bf9c4d9b8793a4e308c9e80691b440f (diff) | |
Enable markdown and rebuild docs
Diffstat (limited to 'docs/reference')
22 files changed, 155 insertions, 137 deletions
diff --git a/docs/reference/EFSA_washoff_2017.html b/docs/reference/EFSA_washoff_2017.html index 1e292af..b424de9 100644 --- a/docs/reference/EFSA_washoff_2017.html +++ b/docs/reference/EFSA_washoff_2017.html @@ -54,10 +54,10 @@ <div class="section level2"> <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2> <p>European Food Safety Authority (2017) EFSA guidance document for - predicting environmental concentrations of active substances of plant - protection products and transformation products of these active substances - in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982 - doi:10.2903/j.efsa.2017.4982</p> +predicting environmental concentrations of active substances of plant +protection products and transformation products of these active substances +in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982 +doi:10.2903/j.efsa.2017.4982</p> </div> <div class="section level2"> diff --git a/docs/reference/FOCUS_GW_scenarios_2012.html b/docs/reference/FOCUS_GW_scenarios_2012.html index 84c2fac..2e9982b 100644 --- a/docs/reference/FOCUS_GW_scenarios_2012.html +++ b/docs/reference/FOCUS_GW_scenarios_2012.html @@ -1,6 +1,6 @@ <!DOCTYPE html> -<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Currently, only scenario names with acronyms and a small subset of the soil definitions are provided. The -soil definitions are from page 46ff. from FOCUS (2012)."><title>A very small subset of the FOCUS Groundwater scenario definitions — FOCUS_GW_scenarios_2012 • pfm</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="A very small subset of the FOCUS Groundwater scenario definitions — FOCUS_GW_scenarios_2012"><meta property="og:description" content="Currently, only scenario names with acronyms and a small subset of the soil definitions are provided. The +<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Currently, only scenario names with acronyms and a small subset of the soil definitions are provided. The +soil definitions are from page 46ff. from FOCUS (2012)."><title>A very small subset of the FOCUS Groundwater scenario definitions — FOCUS_GW_scenarios_2012 • pfm</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="A very small subset of the FOCUS Groundwater scenario definitions — FOCUS_GW_scenarios_2012"><meta property="og:description" content="Currently, only scenario names with acronyms and a small subset of the soil definitions are provided. The soil definitions are from page 46ff. from FOCUS (2012)."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> @@ -45,7 +45,7 @@ soil definitions are from page 46ff. from FOCUS (2012)."><!-- mathjax --><script </div> <div class="ref-description section level2"> - <p>Currently, only scenario names with acronyms and a small subset of the soil definitions are provided. The + <p>Currently, only scenario names with acronyms and a small subset of the soil definitions are provided. The soil definitions are from page 46ff. from FOCUS (2012).</p> </div> @@ -60,9 +60,9 @@ soil definitions are from page 46ff. from FOCUS (2012).</p> </div> <div class="section level2"> <h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a></h2> - <p>FOCUS (2012) Generic guidance for Tier 1 FOCUS ground water assessments. Version 2.1. - FOrum for the Co-ordination of pesticde fate models and their USe. - http://focus.jrc.ec.europa.eu/gw/docs/Generic_guidance_FOCV2_1.pdf</p> + <p>FOCUS (2012) Generic guidance for Tier 1 FOCUS ground water assessments. Version 2.1. +FOrum for the Co-ordination of pesticde fate models and their USe. +http://focus.jrc.ec.europa.eu/gw/docs/Generic_guidance_FOCV2_1.pdf</p> </div> <div class="section level2"> diff --git a/docs/reference/FOCUS_Step_12_scenarios.html b/docs/reference/FOCUS_Step_12_scenarios.html index dc1e4c3..bcf71ed 100644 --- a/docs/reference/FOCUS_Step_12_scenarios.html +++ b/docs/reference/FOCUS_Step_12_scenarios.html @@ -53,9 +53,9 @@ The text file is not included in the package as its licence is not clear.</p> <div class="section level2"> <h2 id="format">Format<a class="anchor" aria-label="anchor" href="#format"></a></h2> <p>A list containing the scenario names in a character vector called 'names', - the drift percentiles in a matrix called 'drift', interception percentages in - a matrix called 'interception' and the runoff/drainage percentages for Step 2 - calculations in a matrix called 'rd'.</p> +the drift percentiles in a matrix called 'drift', interception percentages in +a matrix called 'interception' and the runoff/drainage percentages for Step 2 +calculations in a matrix called 'rd'.</p> </div> <div class="section level2"> diff --git a/docs/reference/FOMC_actual_twa.html b/docs/reference/FOMC_actual_twa.html index f7b0140..226d44f 100644 --- a/docs/reference/FOMC_actual_twa.html +++ b/docs/reference/FOMC_actual_twa.html @@ -58,8 +58,8 @@ <div class="section level2"> <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2> <p>FOCUS (2014) Generic Guidance for Estimating Persistence and Degradation - Kinetics from Environmental Fate Studies on Pesticides in EU Registration, Version 1.1, - 18 December 2014, p. 251</p> +Kinetics from Environmental Fate Studies on Pesticides in EU Registration, Version 1.1, +18 December 2014, p. 251</p> </div> <div class="section level2"> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> diff --git a/docs/reference/GUS.html b/docs/reference/GUS.html index d2aa03b..e3a451e 100644 --- a/docs/reference/GUS.html +++ b/docs/reference/GUS.html @@ -93,7 +93,7 @@ be conducted under use conditions.</p></dd> <dt>Koc</dt> <dd><p>The sorption constant normalised to organic carbon. Gustafson does not mention the nonlinearity of the sorption constant commonly -found and usually described by Freundlich sorption, therefore it is +found and usually described by Freundlich sorption, therefore it is unclear at which reference concentration the Koc should be observed (and if the reference concentration would be in soil or in porewater).</p></dd> @@ -104,7 +104,7 @@ chyaml field, this information is used, with defaults specified below.</p></dd> <dt>degradation_value</dt> -<dd><p>Which of the available degradation values should +<dd><p>Which of the available degradation values should be used?</p></dd> @@ -149,7 +149,7 @@ be Koc values at a concentration of 1 mg/L in the water phase.</p></dd> <p>A list with the DT50 and Koc used as well as the resulting score - of class GUS_result</p> +of class GUS_result</p> </div> <div class="section level2"> <h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a></h2> diff --git a/docs/reference/PEC_soil.html b/docs/reference/PEC_soil.html index abe8e5a..98ac3ac 100644 --- a/docs/reference/PEC_soil.html +++ b/docs/reference/PEC_soil.html @@ -225,33 +225,33 @@ from the EFSA guidance from 2015 (p. 80) are be reproduced, this is not true for the TWA concentrations given for the same example in the EFSA guidance from 2017 (p. 92).</p> <p>According to the EFSA guidance (EFSA, 2017, p. 43), leaching should be - taken into account for the EFSA 2017 scenarios, using the evaluation depth - (here mixing depth) as the depth of the layer from which leaching takes - place. However, as the amount leaching below the evaluation depth - (often 5 cm) will partly be mixed back during tillage, the default in this function - is to use the tillage depth for the calculation of the leaching rate.</p> +taken into account for the EFSA 2017 scenarios, using the evaluation depth +(here mixing depth) as the depth of the layer from which leaching takes +place. However, as the amount leaching below the evaluation depth +(often 5 cm) will partly be mixed back during tillage, the default in this function +is to use the tillage depth for the calculation of the leaching rate.</p> <p>If temperature information is available in the selected scenarios, as - e.g. in the EFSA scenarios, the DT50 for groundwater modelling - (destination 'PECgw') is taken from the chent object, otherwise the DT50 - with destination 'PECsoil'.</p> +e.g. in the EFSA scenarios, the DT50 for groundwater modelling +(destination 'PECgw') is taken from the chent object, otherwise the DT50 +with destination 'PECsoil'.</p> </div> <div class="section level2"> <h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a></h2> <p>EFSA Panel on Plant Protection Products and their Residues (2012) - Scientific Opinion on the science behind the guidance for scenario - selection and scenario parameterisation for predicting environmental - concentrations of plant protection products in soil. <em>EFSA Journal</em> - <b>10</b>(2) 2562, doi:10.2903/j.efsa.2012.2562</p> +Scientific Opinion on the science behind the guidance for scenario +selection and scenario parameterisation for predicting environmental +concentrations of plant protection products in soil. <em>EFSA Journal</em> +<b>10</b>(2) 2562, doi:10.2903/j.efsa.2012.2562</p> <p>EFSA (European Food Safety Authority) 2017) EFSA guidance document for - predicting environmental concentrations of active substances of plant - protection products and transformation products of these active substances - in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982 - doi:10.2903/j.efsa.2017.4982</p> +predicting environmental concentrations of active substances of plant +protection products and transformation products of these active substances +in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982 +doi:10.2903/j.efsa.2017.4982</p> <p>EFSA (European Food Safety Authority) (2015) EFSA guidance document for - predicting environmental concentrations of active substances of plant - protection products and transformation products of these active substances - in soil. <em>EFSA Journal</em> <b>13</b>(4) 4093 - doi:10.2903/j.efsa.2015.4093</p> +predicting environmental concentrations of active substances of plant +protection products and transformation products of these active substances +in soil. <em>EFSA Journal</em> <b>13</b>(4) 4093 +doi:10.2903/j.efsa.2015.4093</p> </div> <div class="section level2"> <h2 id="author">Author<a class="anchor" aria-label="anchor" href="#author"></a></h2> diff --git a/docs/reference/PEC_sw_drainage_UK.html b/docs/reference/PEC_sw_drainage_UK.html index 8e649b9..5068319 100644 --- a/docs/reference/PEC_sw_drainage_UK.html +++ b/docs/reference/PEC_sw_drainage_UK.html @@ -102,12 +102,12 @@ published on the CRC website</p> <div class="section level2"> <h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a></h2> <p>HSE's Chemicals Regulation Division (CRD) Active substance - PECsw calculations (for UK specific authorisation requests) - <a href="https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/active-substance-uk.htm" class="external-link">https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/active-substance-uk.htm</a> - accessed 2019-09-27</p> +PECsw calculations (for UK specific authorisation requests) +<a href="https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/active-substance-uk.htm" class="external-link">https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/active-substance-uk.htm</a> +accessed 2019-09-27</p> <p>Drainage PECs Version 1.0 (2015) Spreadsheet published at - <a href="https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/pec-tools-2015/PEC%20sw-sed%20(drainage).xlsx" class="external-link">https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/pec-tools-2015/PEC%20sw-sed%20(drainage).xlsx</a> - accessed 2019-09-27</p> +<a href="https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/pec-tools-2015/PEC%20sw-sed%20(drainage).xlsx" class="external-link">https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/pec-tools-2015/PEC%20sw-sed%20(drainage).xlsx</a> +accessed 2019-09-27</p> </div> <div class="section level2"> <h2 id="author">Author<a class="anchor" aria-label="anchor" href="#author"></a></h2> diff --git a/docs/reference/PEC_sw_drift.html b/docs/reference/PEC_sw_drift.html index 3e1d4c8..d7e940c 100644 --- a/docs/reference/PEC_sw_drift.html +++ b/docs/reference/PEC_sw_drift.html @@ -87,7 +87,7 @@ with input via spray drift.</p> <dt>drift_data</dt> -<dd><p>Source of drift percentage data. If 'JKI', the [drift_data_JKI] +<dd><p>Source of drift percentage data. If 'JKI', the <a href="drift_data_JKI.html">drift_data_JKI</a> included in the package is used. If 'RF', the Rautmann formula is used, if implemented for the crop type and number of applications</p></dd> diff --git a/docs/reference/PEC_sw_exposit_drainage.html b/docs/reference/PEC_sw_exposit_drainage.html index 74f1b60..f57fc56 100644 --- a/docs/reference/PEC_sw_exposit_drainage.html +++ b/docs/reference/PEC_sw_exposit_drainage.html @@ -82,7 +82,7 @@ details, see the discussion of the function arguments below.</p> <div class="section level2"> <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2> <p>Excel 3.02 spreadsheet available from - <a href="https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3" class="external-link">https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3</a></p> +<a href="https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3" class="external-link">https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3</a></p> </div> <div class="section level2"> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> @@ -128,19 +128,17 @@ autumn/winter/early spring.</p></dd> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> -<p>A list containing the following components</p> -<p></p> -<dl><dt>perc_runoff</dt> +<p>A list containing the following components</p><dl><dt>perc_runoff</dt> <dd><p>The runoff percentages for dissolved and bound substance</p></dd> - <dt>runoff</dt> +<dt>runoff</dt> <dd><p>A matrix containing dissolved and bound input for the different distances</p></dd> - <dt>PEC_sw_runoff</dt> +<dt>PEC_sw_runoff</dt> <dd><p>A matrix containing PEC values for dissolved and bound substance - for the different distances. If the rate was given in g/ha, the PECsw are in microg/L.</p></dd> +for the different distances. If the rate was given in g/ha, the PECsw are in microg/L.</p></dd> + - </dl></div> <div class="section level2"> <h2 id="see-also">See also<a class="anchor" aria-label="anchor" href="#see-also"></a></h2> diff --git a/docs/reference/PEC_sw_exposit_runoff.html b/docs/reference/PEC_sw_exposit_runoff.html index a3845ee..73e3e43 100644 --- a/docs/reference/PEC_sw_exposit_runoff.html +++ b/docs/reference/PEC_sw_exposit_runoff.html @@ -67,7 +67,7 @@ in the worksheet "Konzept Runoff".</p> <div class="section level2"> <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2> <p>Excel 3.02 spreadsheet available from - <a href="https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3" class="external-link">https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3</a></p> +<a href="https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3" class="external-link">https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3</a></p> </div> <div class="section level2"> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> @@ -115,19 +115,17 @@ and the bound fraction.</p></dd> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> -<p>A list containing the following components</p> -<p></p> -<dl><dt>perc_runoff</dt> +<p>A list containing the following components</p><dl><dt>perc_runoff</dt> <dd><p>The runoff percentages for dissolved and bound substance</p></dd> - <dt>runoff</dt> +<dt>runoff</dt> <dd><p>A matrix containing dissolved and bound input for the different distances</p></dd> - <dt>PEC_sw_runoff</dt> +<dt>PEC_sw_runoff</dt> <dd><p>A matrix containing PEC values for dissolved and bound substance - for the different distances. If the rate was given in g/ha, the PECsw are in microg/L.</p></dd> +for the different distances. If the rate was given in g/ha, the PECsw are in microg/L.</p></dd> + - </dl></div> <div class="section level2"> <h2 id="see-also">See also<a class="anchor" aria-label="anchor" href="#see-also"></a></h2> diff --git a/docs/reference/PEC_sw_focus.html b/docs/reference/PEC_sw_focus.html index 78f6453..e758347 100644 --- a/docs/reference/PEC_sw_focus.html +++ b/docs/reference/PEC_sw_focus.html @@ -91,7 +91,7 @@ to be used with the FOCUS calculator.</p> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <dl><dt>parent</dt> <dd><p>A list containing substance specific parameters, e.g. -conveniently generated by [chent_focus_sw].</p></dd> +conveniently generated by <a href="chent_focus_sw.html">chent_focus_sw</a>.</p></dd> <dt>rate</dt> @@ -113,7 +113,7 @@ applications are given explicitly</p></dd> <dt>met</dt> <dd><p>A list containing metabolite specific parameters. e.g. -conveniently generated by [chent_focus_sw]. If not NULL, +conveniently generated by <a href="chent_focus_sw.html">chent_focus_sw</a>. If not NULL, the PEC is calculated for this compound, not the parent.</p></dd> @@ -121,18 +121,18 @@ the PEC is calculated for this compound, not the parent.</p></dd> <dd><p>The fraction of the application rate reaching the waterbody via drift. If NA, this is derived from the scenario name and the number of applications via the drift data defined by the -[FOCUS_Step_12_scenarios]</p></dd> +<a href="FOCUS_Step_12_scenarios.html">FOCUS_Step_12_scenarios</a></p></dd> <dt>f_rd</dt> <dd><p>The fraction of the amount applied reaching the waterbody via -runoff/drainage. At Step 1, it is assumed to be 10<!-- %, be it the --> +runoff/drainage. At Step 1, it is assumed to be 10%, be it the parent or a metabolite</p></dd> <dt>scenario</dt> <dd><p>The name of the scenario. Must be one of the scenario -names given in [FOCUS_Step_12_scenarios]</p></dd> +names given in <a href="FOCUS_Step_12_scenarios.html">FOCUS_Step_12_scenarios</a></p></dd> <dt>region</dt> @@ -174,21 +174,21 @@ should be written</p></dd> <div class="section level2"> <h2 id="note">Note<a class="anchor" aria-label="anchor" href="#note"></a></h2> <p>The formulas for input to the waterbody via runoff/drainage of the - parent and subsequent formation of the metabolite in water is not - documented in the model description coming with the calculator. As one would - expect, this appears to be (as we get the same results) calculated by - multiplying the application rate with the molar weight - correction and the formation fraction in water/sediment systems.</p> +parent and subsequent formation of the metabolite in water is not +documented in the model description coming with the calculator. As one would +expect, this appears to be (as we get the same results) calculated by +multiplying the application rate with the molar weight +correction and the formation fraction in water/sediment systems.</p> <p>Step 2 is not implemented.</p> </div> <div class="section level2"> <h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a></h2> <p>FOCUS (2014) Generic guidance for Surface Water Scenarios (version 1.4). - FOrum for the Co-ordination of pesticde fate models and their USe. - http://esdac.jrc.ec.europa.eu/public_path/projects_data/focus/sw/docs/Generic<!-- %20FOCUS_SWS_vc1.4.pdf --></p> +FOrum for the Co-ordination of pesticde fate models and their USe. +http://esdac.jrc.ec.europa.eu/public_path/projects_data/focus/sw/docs/Generic%20FOCUS_SWS_vc1.4.pdf</p> <p>Website of the Steps 1 and 2 calculator at the Joint Research - Center of the European Union: - http://esdac.jrc.ec.europa.eu/projects/stepsonetwo</p> +Center of the European Union: +http://esdac.jrc.ec.europa.eu/projects/stepsonetwo</p> </div> <div class="section level2"> diff --git a/docs/reference/SFO_actual_twa.html b/docs/reference/SFO_actual_twa.html index e07138c..0c3813f 100644 --- a/docs/reference/SFO_actual_twa.html +++ b/docs/reference/SFO_actual_twa.html @@ -54,8 +54,8 @@ <div class="section level2"> <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2> <p>FOCUS (2014) Generic Guidance for Estimating Persistence and Degradation - Kinetics from Environmental Fate Studies on Pesticides in EU Registration, Version 1.1, - 18 December 2014, p. 251</p> +Kinetics from Environmental Fate Studies on Pesticides in EU Registration, Version 1.1, +18 December 2014, p. 251</p> </div> <div class="section level2"> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> diff --git a/docs/reference/SSLRC_mobility_classification.html b/docs/reference/SSLRC_mobility_classification.html index 398734d..0530260 100644 --- a/docs/reference/SSLRC_mobility_classification.html +++ b/docs/reference/SSLRC_mobility_classification.html @@ -65,17 +65,17 @@ checked against the spreadsheet published on the CRC website</p> <p>A list containing the classification and the percentage of the - compound transported per 10 mm drain water</p> +compound transported per 10 mm drain water</p> </div> <div class="section level2"> <h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a></h2> <p>HSE's Chemicals Regulation Division (CRD) Active substance - PECsw calculations (for UK specific authorisation requests) - <a href="https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/active-substance-uk.htm" class="external-link">https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/active-substance-uk.htm</a> - accessed 2019-09-27</p> +PECsw calculations (for UK specific authorisation requests) +<a href="https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/active-substance-uk.htm" class="external-link">https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/active-substance-uk.htm</a> +accessed 2019-09-27</p> <p>Drainage PECs Version 1.0 (2015) Spreadsheet published at - <a href="https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/pec-tools-2015/PEC%20sw-sed%20(drainage).xlsx" class="external-link">https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/pec-tools-2015/PEC%20sw-sed%20(drainage).xlsx</a> - accessed 2019-09-27</p> +<a href="https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/pec-tools-2015/PEC%20sw-sed%20(drainage).xlsx" class="external-link">https://www.hse.gov.uk/pesticides/topics/pesticide-approvals/pesticides-registration/data-requirements-handbook/fate/pec-tools-2015/PEC%20sw-sed%20(drainage).xlsx</a> +accessed 2019-09-27</p> </div> <div class="section level2"> <h2 id="author">Author<a class="anchor" aria-label="anchor" href="#author"></a></h2> diff --git a/docs/reference/TOXSWA_cwa.html b/docs/reference/TOXSWA_cwa.html index a5a9a49..8908748 100644 --- a/docs/reference/TOXSWA_cwa.html +++ b/docs/reference/TOXSWA_cwa.html @@ -157,7 +157,7 @@ for the requested moving window sizes in days.</p></dd> </div><p></p><hr><a id="method-TOXSWA_cwa-moving_windows"></a><div class="section"> <h3 id="method-moving-windows-">Method <code>moving_windows()</code><a class="anchor" aria-label="anchor" href="#method-moving-windows-"></a></h3> -<p>Add to the `windows` field described above.</p><div class="section"> +<p>Add to the <code>windows</code> field described above.</p><div class="section"> <h4 id="usage-1">Usage<a class="anchor" aria-label="anchor" href="#usage-1"></a></h4> <p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va">TOXSWA_cwa</span><span class="op">$</span><span class="fu">moving_windows</span><span class="op">(</span><span class="va">windows</span>, total <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div><p></p></div> </div> @@ -179,7 +179,7 @@ suspended matter will be used.</p></dd> </div><p></p><hr><a id="method-TOXSWA_cwa-get_events"></a><div class="section"> <h3 id="method-get-events-">Method <code>get_events()</code><a class="anchor" aria-label="anchor" href="#method-get-events-"></a></h3> <p>Populate a datataframe with event information for the specified -threshold value. The resulting dataframe is stored in the `events` +threshold value. The resulting dataframe is stored in the <code>events</code> field of the object.</p><div class="section"> <h4 id="usage-2">Usage<a class="anchor" aria-label="anchor" href="#usage-2"></a></h4> <p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va">TOXSWA_cwa</span><span class="op">$</span><span class="fu">get_events</span><span class="op">(</span><span class="va">thresholds</span>, total <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div><p></p></div> @@ -201,7 +201,7 @@ suspended matter will be used.</p></dd> </div><p></p><hr><a id="method-TOXSWA_cwa-print"></a><div class="section"> <h3 id="method-print-">Method <code><a href="https://rdrr.io/r/base/print.html" class="external-link">print()</a></code><a class="anchor" aria-label="anchor" href="#method-print-"></a></h3> -<p>Print a `TOXSWA_cwa` object</p><div class="section"> +<p>Print a <code>TOXSWA_cwa</code> object</p><div class="section"> <h4 id="usage-3">Usage<a class="anchor" aria-label="anchor" href="#usage-3"></a></h4> <p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va">TOXSWA_cwa</span><span class="op">$</span><span class="fu">print</span><span class="op">(</span><span class="op">)</span></span></code></pre></div><p></p></div> </div> @@ -237,7 +237,31 @@ suspended matter will be used.</p></dd> <span class="r-in"><span><span class="va">H_sw_R1_stream</span><span class="op">$</span><span class="fu">moving_windows</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">7</span>, <span class="fl">21</span><span class="op">)</span><span class="op">)</span></span></span> <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">H_sw_R1_stream</span><span class="op">)</span></span></span> <span class="r-out co"><span class="r-pr">#></span> <TOXSWA_cwa> data from file 00003s_pa.cwa segment 20 </span> -<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in head(self$cwas):</span> could not find function "head"</span> +<span class="r-out co"><span class="r-pr">#></span> datetime t t_firstjan t_rel_to_max cwa_mug_per_L</span> +<span class="r-out co"><span class="r-pr">#></span> 20 1978-10-01 00:00:00 0.000 273.0000 -55.333 0</span> +<span class="r-out co"><span class="r-pr">#></span> 40 1978-10-01 01:00:00 0.042 273.0417 -55.291 0</span> +<span class="r-out co"><span class="r-pr">#></span> 60 1978-10-01 02:00:00 0.083 273.0833 -55.250 0</span> +<span class="r-out co"><span class="r-pr">#></span> 80 1978-10-01 03:00:00 0.125 273.1250 -55.208 0</span> +<span class="r-out co"><span class="r-pr">#></span> 100 1978-10-01 04:00:00 0.167 273.1667 -55.166 0</span> +<span class="r-out co"><span class="r-pr">#></span> 120 1978-10-01 05:00:00 0.208 273.2083 -55.125 0</span> +<span class="r-out co"><span class="r-pr">#></span> cwa_tot_mug_per_L</span> +<span class="r-out co"><span class="r-pr">#></span> 20 0</span> +<span class="r-out co"><span class="r-pr">#></span> 40 0</span> +<span class="r-out co"><span class="r-pr">#></span> 60 0</span> +<span class="r-out co"><span class="r-pr">#></span> 80 0</span> +<span class="r-out co"><span class="r-pr">#></span> 100 0</span> +<span class="r-out co"><span class="r-pr">#></span> 120 0</span> +<span class="r-out co"><span class="r-pr">#></span> Moving window analysis</span> +<span class="r-out co"><span class="r-pr">#></span> window max_TWAC max_AUC_h max_AUC_d</span> +<span class="r-out co"><span class="r-pr">#></span> 1 7 days 2.3926551 401.9660 16.74859</span> +<span class="r-out co"><span class="r-pr">#></span> 2 21 days 0.8369248 421.8101 17.57542</span> +<span class="r-out co"><span class="r-pr">#></span> Event statistics for threshold 2 </span> +<span class="r-out co"><span class="r-pr">#></span> t_start cwa_max duration pre_interval AUC_h AUC_d</span> +<span class="r-out co"><span class="r-pr">#></span> 1 44.375 4.167238 0.208 44.375 17.77202 0.740501</span> +<span class="r-out co"><span class="r-pr">#></span> 2 55.042 40.584010 0.583 10.459 398.21189 16.592162</span> +<span class="r-out co"><span class="r-pr">#></span> Event statistics for threshold 10 </span> +<span class="r-out co"><span class="r-pr">#></span> t_start cwa_max duration pre_interval AUC_h AUC_d</span> +<span class="r-out co"><span class="r-pr">#></span> 1 55.083 40.58401 0.459 55.083 379.433 15.80971</span> </code></pre></div> </div> </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> diff --git a/docs/reference/TSCF-1.png b/docs/reference/TSCF-1.png Binary files differindex 048befb..788f4d3 100644 --- a/docs/reference/TSCF-1.png +++ b/docs/reference/TSCF-1.png diff --git a/docs/reference/TSCF.html b/docs/reference/TSCF.html index eb1398b..6ac2f56 100644 --- a/docs/reference/TSCF.html +++ b/docs/reference/TSCF.html @@ -83,7 +83,7 @@ or ionic.</p> <div class="section level2"> <h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a></h2> <p>FOCUS (2014) Generic Guidance for Tier 1 FOCUS Ground Water Assessments. - Version 2.2, May 2014 +Version 2.2, May 2014 Dettenmaier EM, Doucette WJ and Bugbee B (2009) Chemical hydrophobicity and uptake by plant roots. Environ. Sci. Technol 43, 324 - 329</p> </div> @@ -91,13 +91,11 @@ by plant roots. Environ. Sci. Technol 43, 324 - 329</p> <div class="section level2"> <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2> <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">TSCF</span>, <span class="op">-</span><span class="fl">1</span>, <span class="fl">5</span>, xlab <span class="op">=</span> <span class="st">"log Kow"</span>, ylab <span class="op">=</span> <span class="st">"TSCF"</span>, ylim <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">1.1</span><span class="op">)</span><span class="op">)</span></span></span> -<span class="r-plt img"><img src="TSCF-1.png" alt="" width="700" height="433"></span> <span class="r-in"><span><span class="va">TSCF_2</span> <span class="op"><-</span> <span class="kw">function</span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="fu">TSCF</span><span class="op">(</span><span class="va">x</span>, method <span class="op">=</span> <span class="st">"dettenmaier09"</span><span class="op">)</span></span></span> <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/graphics/curve.html" class="external-link">curve</a></span><span class="op">(</span><span class="va">TSCF_2</span>, <span class="op">-</span><span class="fl">1</span>, <span class="fl">5</span>, add <span class="op">=</span> <span class="cn">TRUE</span>, lty <span class="op">=</span> <span class="fl">2</span><span class="op">)</span></span></span> -<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in curve(TSCF_2, -1, 5, add = TRUE, lty = 2):</span> could not find function "curve"</span> <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/graphics/legend.html" class="external-link">legend</a></span><span class="op">(</span><span class="st">"topright"</span>, lty <span class="op">=</span> <span class="fl">1</span><span class="op">:</span><span class="fl">2</span>, bty <span class="op">=</span> <span class="st">"n"</span>,</span></span> <span class="r-in"><span> legend <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"Briggs et al. (1982)"</span>, <span class="st">"Dettenmaier et al. (2009)"</span><span class="op">)</span><span class="op">)</span></span></span> -<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in legend("topright", lty = 1:2, bty = "n", legend = c("Briggs et al. (1982)", "Dettenmaier et al. (2009)")):</span> could not find function "legend"</span> +<span class="r-plt img"><img src="TSCF-1.png" alt="" width="700" height="433"></span> </code></pre></div> </div> </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> diff --git a/docs/reference/endpoint.html b/docs/reference/endpoint.html index 5e038b1..b17611e 100644 --- a/docs/reference/endpoint.html +++ b/docs/reference/endpoint.html @@ -115,12 +115,12 @@ this function.</p> <dt>value</dt> -<dd><p>The name of the value we want. The list given in the +<dd><p>The name of the value we want. The list given in the usage section is not exclusive</p></dd> <dt>aggregator</dt> -<dd><p>The aggregator function. Can be mean, +<dd><p>The aggregator function. Can be mean, <code><a href="geomean.html">geomean</a></code>, or identity, for example.</p></dd> @@ -147,10 +147,10 @@ about precision?</p></dd> <p>The result from applying the aggregator function to - the values converted to a numeric vector, rounded to the - given number of significant digits, or, if raw = TRUE, - the values as a character value, retaining any implicit - information on precision that may be present.</p> +the values converted to a numeric vector, rounded to the +given number of significant digits, or, if raw = TRUE, +the values as a character value, retaining any implicit +information on precision that may be present.</p> </div> <div class="section level2"> <h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2> diff --git a/docs/reference/max_twa.html b/docs/reference/max_twa.html index 98088fa..15d5201 100644 --- a/docs/reference/max_twa.html +++ b/docs/reference/max_twa.html @@ -82,10 +82,10 @@ SFO, FOMC and DFOP models and to the parent compound</p> <div class="section level2"> <h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a></h2> <p>FOCUS (2006) “Guidance Document on Estimating Persistence and - Degradation Kinetics from Environmental Fate Studies on Pesticides in EU - Registration” Report of the FOCUS Work Group on Degradation Kinetics, - EC Document Reference Sanco/10058/2005 version 2.0, 434 pp, - <a href="http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics" class="external-link">http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p> +Degradation Kinetics from Environmental Fate Studies on Pesticides in EU +Registration” Report of the FOCUS Work Group on Degradation Kinetics, +EC Document Reference Sanco/10058/2005 version 2.0, 434 pp, +<a href="http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics" class="external-link">http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p> </div> <div class="section level2"> <h2 id="see-also">See also<a class="anchor" aria-label="anchor" href="#see-also"></a></h2> diff --git a/docs/reference/perc_runoff_exposit.html b/docs/reference/perc_runoff_exposit.html index ee29f54..ba35561 100644 --- a/docs/reference/perc_runoff_exposit.html +++ b/docs/reference/perc_runoff_exposit.html @@ -50,23 +50,23 @@ <div class="section level2"> <h2 id="format">Format<a class="anchor" aria-label="anchor" href="#format"></a></h2> <p>A data frame with percentage values for the dissolved fraction and the fraction - bound to eroding particles, with Koc classes used as row names</p><dl><dt>Koc_lower_bound</dt> +bound to eroding particles, with Koc classes used as row names</p><dl><dt>Koc_lower_bound</dt> <dd><p>The lower bound of the Koc class</p></dd> - <dt>dissolved</dt> +<dt>dissolved</dt> <dd><p>The percentage of the applied substance transferred to an - adjacent water body in the dissolved phase</p></dd> +adjacent water body in the dissolved phase</p></dd> - <dt>bound</dt> +<dt>bound</dt> <dd><p>The percentage of the applied substance transferred to an - adjacent water body bound to eroding particles</p></dd> +adjacent water body bound to eroding particles</p></dd> + - </dl></div> <div class="section level2"> <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2> <p>Excel 3.02 spreadsheet available from - <a href="https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html" class="external-link">https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html</a></p> +<a href="https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html" class="external-link">https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html</a></p> </div> <div class="section level2"> diff --git a/docs/reference/perc_runoff_reduction_exposit.html b/docs/reference/perc_runoff_reduction_exposit.html index f398ca1..808b110 100644 --- a/docs/reference/perc_runoff_reduction_exposit.html +++ b/docs/reference/perc_runoff_reduction_exposit.html @@ -59,17 +59,17 @@ vegetated buffer widths as row names. The names of the list items are the Exposi from which the values were taken.</p><dl><dt>dissolved</dt> <dd><p>The reduction percentage for the dissolved phase</p></dd> - <dt>bound</dt> +<dt>bound</dt> <dd><p>The reduction percentage for the particulate phase</p></dd> - + </dl></div> <div class="section level2"> <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2> <p>Excel 3.02 spreadsheet available from - <a href="https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html" class="external-link">https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html</a></p> +<a href="https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html" class="external-link">https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html</a></p> <p>Agroscope version 3.01a with additional runoff factors for 3 m and 6 m buffer zones received from Muris Korkaric (not published). - The variant 3.01a2 was introduced for consistency with previous calculations performed by Agroscope for a 3 m buffer zone.</p> +The variant 3.01a2 was introduced for consistency with previous calculations performed by Agroscope for a 3 m buffer zone.</p> </div> <div class="section level2"> diff --git a/docs/reference/soil_scenario_data_EFSA_2015.html b/docs/reference/soil_scenario_data_EFSA_2015.html index 239596c..79cfc68 100644 --- a/docs/reference/soil_scenario_data_EFSA_2015.html +++ b/docs/reference/soil_scenario_data_EFSA_2015.html @@ -1,8 +1,8 @@ <!DOCTYPE html> -<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the -concentration in soil as given in the EFSA guidance (2015, p. 13/14). 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Also, the +<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the +concentration in soil as given in the EFSA guidance (2015, p. 13/14). 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Also, the scenario and model adjustment factors from p. 15 and p. 17 are included."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> @@ -47,25 +47,25 @@ scenario and model adjustment factors from p. 15 and p. 17 are included."><!-- m </div> <div class="ref-description section level2"> - <p>Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the -concentration in soil as given in the EFSA guidance (2015, p. 13/14). Also, the + <p>Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the +concentration in soil as given in the EFSA guidance (2015, p. 13/14). Also, the scenario and model adjustment factors from p. 15 and p. 17 are included.</p> </div> <div class="section level2"> <h2 id="format">Format<a class="anchor" aria-label="anchor" href="#format"></a></h2> - <p>A data frame with one row for each scenario. Row names are the scenario codes, - e.g. CTN for the Northern scenario for the total concentration in soil. Columns are - mostly self-explanatory. <code>rho</code> is the dry bulk density of the top soil.</p> + <p>A data frame with one row for each scenario. Row names are the scenario codes, +e.g. CTN for the Northern scenario for the total concentration in soil. Columns are +mostly self-explanatory. <code>rho</code> is the dry bulk density of the top soil.</p> </div> <div class="section level2"> <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2> <p>EFSA (European Food Safety Authority) (2015) - EFSA guidance document for predicting environmental concentrations - of active substances of plant protection products and transformation products of these - active substances in soil. <em>EFSA Journal</em> <b>13</b>(4) 4093 - doi:10.2903/j.efsa.2015.4093</p> +EFSA guidance document for predicting environmental concentrations +of active substances of plant protection products and transformation products of these +active substances in soil. <em>EFSA Journal</em> <b>13</b>(4) 4093 +doi:10.2903/j.efsa.2015.4093</p> </div> <div class="section level2"> diff --git a/docs/reference/soil_scenario_data_EFSA_2017.html b/docs/reference/soil_scenario_data_EFSA_2017.html index 8e5739e..11eaa53 100644 --- a/docs/reference/soil_scenario_data_EFSA_2017.html +++ b/docs/reference/soil_scenario_data_EFSA_2017.html @@ -1,8 +1,8 @@ <!DOCTYPE html> -<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the -concentration in soil as given in the EFSA guidance (2017, p. 14/15). 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Also, the +<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the +concentration in soil as given in the EFSA guidance (2017, p. 14/15). 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Also, the scenario and model adjustment factors from p. 16 and p. 18 are included."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> @@ -47,25 +47,25 @@ scenario and model adjustment factors from p. 16 and p. 18 are included."><!-- m </div> <div class="ref-description section level2"> - <p>Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the -concentration in soil as given in the EFSA guidance (2017, p. 14/15). Also, the + <p>Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the +concentration in soil as given in the EFSA guidance (2017, p. 14/15). Also, the scenario and model adjustment factors from p. 16 and p. 18 are included.</p> </div> <div class="section level2"> <h2 id="format">Format<a class="anchor" aria-label="anchor" href="#format"></a></h2> - <p>A data frame with one row for each scenario. Row names are the scenario codes, - e.g. CTN for the Northern scenario for the total concentration in soil. Columns are - mostly self-explanatory. <code>rho</code> is the dry bulk density of the top soil.</p> + <p>A data frame with one row for each scenario. Row names are the scenario codes, +e.g. CTN for the Northern scenario for the total concentration in soil. Columns are +mostly self-explanatory. <code>rho</code> is the dry bulk density of the top soil.</p> </div> <div class="section level2"> <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2> <p>EFSA (European Food Safety Authority) (2017) - EFSA guidance document for predicting environmental concentrations - of active substances of plant protection products and transformation products of these - active substances in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982 - doi:10.2903/j.efsa.2017.4982</p> +EFSA guidance document for predicting environmental concentrations +of active substances of plant protection products and transformation products of these +active substances in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982 +doi:10.2903/j.efsa.2017.4982</p> </div> <div class="section level2"> |
