Reorganise data generation

- Use inst/data_generation for R code generating data as in some of my other packages
- data/*.RData files were checked using https://github.com/jranke/dotfiles/blob/main/bin/rda_diff
  contents were not changed
- Remove ChangeLog, the history is in the git logs
- Update docs and some links contained therein
- use \doi{} markup
- Move logs to log directory

1 files changed, 34 insertions, 0 deletions

diff --git a/inst/data_generation/PEC_sw_exposit.R b/inst/data_generation/PEC_sw_exposit.R
new file mode 100644
index 0000000..f7d9737
--- /dev/null
+++ b/inst/data_generation/PEC_sw_exposit.R
@@ -0,0 +1,34 @@
+library(here)
+
+# Runoff percentages
+Koc_breaks <- c(0, 20, 50, 100, 200, 500, 1000, 2000, 5000, 10000, 20000, 50000, Inf)
+tmp <- paste(Koc_breaks[1:11], Koc_breaks[2:12], sep = "-")
+Koc_classes <- c(tmp[1], paste0(">", tmp[2:11]), ">50000")
+perc_runoff_exposit <- data.frame(
+  Koc_lower_bound = Koc_breaks[1:12],
+  dissolved = c(0.11, 0.151, 0.197, 0.248, 0.224, 0.184, 0.133, 0.084, 0.037, 0.031, 0.014, 0.001),
+  bound = c(0, 0, 0, 0.001, 0.004, 0.020, 0.042, 0.091, 0.159, 0.192, 0.291, 0.451))
+rownames(perc_runoff_exposit) <- Koc_classes
+
+# Runoff reduction percentages
+perc_runoff_reduction_exposit <- list(
+   "3.02" = data.frame(
+    dissolved = c(0, 40, 60, 80),
+    bound = c(0, 40, 85, 95),
+    row.names = c("No buffer", paste(c(5, 10, 20), "m"))),
+   "3.01a" = data.frame(
+    dissolved = c(0, 25, 40, 45, 60, 80),
+    bound = c(0, 30, 40, 55, 85, 95),
+    row.names = c("No buffer", paste(c(3, 5, 6, 10, 20), "m"))),
+   "3.01a2" = data.frame(
+    dissolved = c(0, 25),
+    bound = c(0, 25),
+    row.names = c("No buffer", paste(c(3), "m"))),
+  "2.0" = data.frame(
+    dissolved = c(0, 97.5),
+    bound = c(0, 97.5),
+    row.names = c("No buffer", "20 m"))
+)
+
+save(perc_runoff_exposit, perc_runoff_reduction_exposit,
+  file = here("data/perc_runoff.RData"))