Improve docs, fail with erroneus crop_group arguments

PEC_sw_drift: The argument 'crop_group_focus' was renamed
to 'crop_group_RF' to make it easier to understand the
relation to the 'drift_data' argument.

3 files changed, 18 insertions, 15 deletions

diff --git a/log/build.log b/log/build.log
index 2c3c139..edca7f6 100644
--- a/log/build.log
+++ b/log/build.log
@@ -3,5 +3,5 @@
 * checking DESCRIPTION meta-information ... OK
 * checking for LF line-endings in source and make files and shell scripts
 * checking for empty or unneeded directories
-* building ‘pfm_0.6.2.tar.gz’
+* building ‘pfm_0.6.3.tar.gz’
 
diff --git a/log/check.log b/log/check.log
index 93948df..f6d14ce 100644
--- a/log/check.log
+++ b/log/check.log
@@ -1,22 +1,24 @@
-* using log directory ‘/home/agsad.admin.ch/f80868656/projects/pfm/pfm.Rcheck’
+* using log directory ‘/home/jranke/git/pfm/pfm.Rcheck’
 * using R version 4.3.3 (2024-02-29)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
-    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
+    gcc (Debian 12.2.0-14) 12.2.0
+    GNU Fortran (Debian 12.2.0-14) 12.2.0
+* running under: Debian GNU/Linux 12 (bookworm)
 * using session charset: UTF-8
 * using options ‘--no-tests --as-cran’
 * checking for file ‘pfm/DESCRIPTION’ ... OK
 * checking extension type ... Package
-* this is package ‘pfm’ version ‘0.6.2’
+* this is package ‘pfm’ version ‘0.6.3’
 * package encoding: UTF-8
-* checking CRAN incoming feasibility ... [2s/14s] NOTE
+* checking CRAN incoming feasibility ... [1s/103s] NOTE
 Maintainer: ‘Johannes Ranke <johannes.ranke@agroscope.admin.ch>’
 
-Size of tarball: 8530336 bytes
+Size of tarball: 8530180 bytes
 * checking package namespace information ... OK
-* checking package dependencies ... OK
+* checking package dependencies ...Warning: unable to access index for repository https://cran.rstudio.com/src/contrib:
+  cannot open URL 'https://cran.rstudio.com/src/contrib/PACKAGES'
+ OK
 * checking if this is a source package ... OK
 * checking if there is a namespace ... OK
 * checking for executable files ... OK
@@ -29,7 +31,8 @@ Size of tarball: 8530336 bytes
   sub-directories of 1Mb or more:
     testdata   9.9Mb
 * checking package directory ... OK
-* checking for future file timestamps ... OK
+* checking for future file timestamps ... NOTE
+unable to verify current time
 * checking DESCRIPTION meta-information ... OK
 * checking top-level files ... OK
 * checking for left-over files ... OK
@@ -72,9 +75,9 @@ Skipping checking HTML validation: no command 'tidy' found
 * checking for detritus in the temp directory ... OK
 * DONE
 
-Status: 3 NOTEs
+Status: 4 NOTEs
 See
-  ‘/home/agsad.admin.ch/f80868656/projects/pfm/pfm.Rcheck/00check.log’
+  ‘/home/jranke/git/pfm/pfm.Rcheck/00check.log’
 for details.
 
 
diff --git a/log/test.log b/log/test.log
index 71834bd..8393cf9 100644
--- a/log/test.log
+++ b/log/test.log
@@ -2,17 +2,17 @@
 ✔ | F W  S  OK | Context
 ✔ |          7 | Exposit calculations
 ✔ |          6 | Geometric mean calculation
-✔ |          1 | Check max_twa for parent mkinfit models against analytical solutions [1.1s]
+✔ |          1 | Check max_twa for parent mkinfit models against analytical solutions
 ✔ |          1 | Simple PEC sediment calculations
 ✔ |         17 | Simple PEC soil calculations
 ✔ |          7 | Simple PEC surface water calculations with drift entry
 ✔ |          1 | Actual and time weighted average concentrations for SFO kinetics
 ✔ |          9 | FOCUS Step 1 calculations
 ✔ |          8 | FOCUS Steps 12 input files
-✔ |          7 | Read and analyse TOXSWA cwa files [4.7s]
+✔ |          7 | Read and analyse TOXSWA cwa files [4.2s]
 ✔ |         12 | UK drainage PEC calculations
 
 ══ Results ═════════════════════════════════════════════════════════════════════════════════════════
-Duration: 6.4 s
+Duration: 5.5 s
 
 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 76 ]