Add dots argument to plot.one_boxHEADmain

Also, use markdown for some links that R CMD check complained about.

6 files changed, 10 insertions, 10 deletions

diff --git a/man/TOXSWA_cwa.Rd b/man/TOXSWA_cwa.Rd
index 0923f10..0e8a953 100644
--- a/man/TOXSWA_cwa.Rd
+++ b/man/TOXSWA_cwa.Rd
@@ -4,7 +4,7 @@
 \alias{TOXSWA_cwa}
 \title{R6 class for holding TOXSWA water concentration data and associated statistics}
 \format{
-An \code{\link{R6Class}} generator object.
+An \link[R6:R6Class]{R6::R6Class} generator object.
 }
 \description{
 An R6 class for holding TOXSWA water concentration (cwa) data
diff --git a/man/max_twa.Rd b/man/max_twa.Rd
index 43ad50e..2bba22f 100644
--- a/man/max_twa.Rd
+++ b/man/max_twa.Rd
@@ -7,7 +7,7 @@
 max_twa(x, window = 21)
 }
 \arguments{
-\item{x}{An object of type \code{\link{one_box}}}
+\item{x}{An object of type \link{one_box}}
 
 \item{window}{The size of the moving window}
 }
@@ -19,7 +19,7 @@ for finding the maximum. It is therefore recommended to check this using
 \code{max_twa}.
 }
 \details{
-The method working directly on fitted \code{\link{mkinfit}} objects uses the
+The method working directly on fitted \link[mkin:mkinfit]{mkin::mkinfit} objects uses the
 equations given in the PEC soil section of the FOCUS guidance and is restricted
 SFO, FOMC and DFOP models and to the parent compound
 }
diff --git a/man/one_box.Rd b/man/one_box.Rd
index a60aa39..83a9fe0 100644
--- a/man/one_box.Rd
+++ b/man/one_box.Rd
@@ -19,10 +19,10 @@ one_box(x, ini, ..., t_end = 100, res = 0.01)
 \item{x}{When numeric, this is the half-life to be used for an exponential
 decline. When a character string specifying a parent decline model is given
 e.g. \code{FOMC}, \code{parms} must contain the corresponding parameters.
-If x is an \code{\link{mkinfit}} object, the decline is calculated from this
+If x is an \link[mkin:mkinfit]{mkin::mkinfit} object, the decline is calculated from this
 object.}
 
-\item{ini}{The initial amount. If x is an \code{\link{mkinfit}} object, and
+\item{ini}{The initial amount. If x is an \link[mkin:mkinfit]{mkin::mkinfit} object, and
 ini is 'model', the fitted initial concentrations are used. Otherwise, ini
 must be numeric. If it has length one, it is used for the parent and
 initial values of metabolites are zero, otherwise, it must give values for
@@ -37,7 +37,7 @@ all observed variables.}
 \item{parms}{A named numeric vector containing the model parameters}
 }
 \value{
-An object of class \code{one_box}, inheriting from \code{\link{ts}}.
+An object of class \code{one_box}, inheriting from \link{ts}.
 }
 \description{
 Create a time series of decline data
diff --git a/man/plot.one_box.Rd b/man/plot.one_box.Rd
index 443be99..91fddf0 100644
--- a/man/plot.one_box.Rd
+++ b/man/plot.one_box.Rd
@@ -16,7 +16,7 @@
 )
 }
 \arguments{
-\item{x}{The object of type \code{\link{one_box}} to be plotted}
+\item{x}{The object of type \link{one_box} to be plotted}
 
 \item{xlim}{Limits for the x axis}
 
@@ -51,5 +51,5 @@ plot(pred_2_saw)
 plot(pred_2_saw, max_twa = 21, max_twa_var = "m1")
 }
 \seealso{
-\code{\link{sawtooth}}
+\link{sawtooth}
 }
diff --git a/man/sawtooth.Rd b/man/sawtooth.Rd
index 0850ded..d85b161 100644
--- a/man/sawtooth.Rd
+++ b/man/sawtooth.Rd
@@ -12,7 +12,7 @@ sawtooth(
 )
 }
 \arguments{
-\item{x}{A \code{\link{one_box}} object}
+\item{x}{A \link{one_box} object}
 
 \item{n}{The number of applications. If \code{applications} is specified, \code{n} is ignored}
 
diff --git a/man/twa.Rd b/man/twa.Rd
index a3509cd..da66257 100644
--- a/man/twa.Rd
+++ b/man/twa.Rd
@@ -10,7 +10,7 @@ twa(x, window = 21)
 \method{twa}{one_box}(x, window = 21)
 }
 \arguments{
-\item{x}{An object of type \code{\link{one_box}}}
+\item{x}{An object of type \link{one_box}}
 
 \item{window}{The size of the moving window}
 }