Set up FOCUS PELMO runs and run them in parallel

- This works on Linux using wine
- PELMO runs (including pelmo.inp files) are correctly generated
- The PLM files for FOCUS Pesticide_D in the test data archive are
  correctly reproduced
- The data files (including FOCUS groundwater scenario data) are now
  created and documented in R files

1 files changed, 22 insertions, 0 deletions

diff --git a/man/create_run_list.Rd b/man/create_run_list.Rd
new file mode 100644
index 0000000..3151165
--- /dev/null
+++ b/man/create_run_list.Rd
@@ -0,0 +1,22 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/PELMO_runs.R
+\name{create_run_list}
+\alias{create_run_list}
+\title{Create a list of runs that we can traverse}
+\usage{
+create_run_list(runs, psm_dir = ".", check_psm_files = FALSE)
+}
+\arguments{
+\item{runs}{A list of lists. Each inner lists has an element named 'psm'
+that holds the psm string, and elements named using three letter crop acronyms,
+as used in \code{\link{FOCUS_PELMO_crops}},
+that hold character vectors of three letter scenario acronyms
+as used in \code{\link{FOCUS_GW_scenarios_2012}}.}
+
+\item{psm_dir}{The directory where the psm files are located}
+
+\item{check_psm_files}{Should we check if the psm file exists}
+}
+\description{
+Create a list of runs that we can traverse
+}